Variant report
| Variant | rs13033906 |
|---|---|
| Chromosome Location | chr2:125415187-125415188 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10171962 | 0.99[ASN][1000 genomes] |
| rs10202904 | 0.82[CHB][hapmap] |
| rs10496638 | 0.81[CHB][hapmap] |
| rs11681479 | 0.82[CHB][hapmap] |
| rs11684957 | 0.81[CHB][hapmap] |
| rs12619819 | 0.80[JPT][hapmap];0.81[AMR][1000 genomes] |
| rs12711689 | 0.81[CHB][hapmap] |
| rs12711690 | 0.81[CHB][hapmap] |
| rs13008849 | 0.85[ASN][1000 genomes] |
| rs13022965 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs13026562 | 0.82[CHB][hapmap] |
| rs13385718 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs13386176 | 0.81[CHB][hapmap] |
| rs13399532 | 0.81[CHB][hapmap] |
| rs13413315 | 0.81[CHB][hapmap] |
| rs13415836 | 0.81[CHB][hapmap] |
| rs13432730 | 0.82[CHB][hapmap] |
| rs17011871 | 0.82[CHB][hapmap] |
| rs17011873 | 0.81[CHB][hapmap] |
| rs17011877 | 0.81[CHB][hapmap] |
| rs17392772 | 0.91[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1869500 | 0.81[CHB][hapmap] |
| rs35658694 | 0.92[ASN][1000 genomes] |
| rs4848254 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs4848258 | 0.82[CHB][hapmap] |
| rs4848963 | 1.00[ASN][1000 genomes] |
| rs4848965 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs4848966 | 0.85[ASN][1000 genomes] |
| rs6541968 | 0.82[CHB][hapmap] |
| rs6710630 | 1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs6739399 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs721520 | 0.82[CHB][hapmap] |
| rs7567761 | 0.82[CHB][hapmap] |
| rs7567777 | 0.81[CHB][hapmap] |
| rs7568564 | 0.81[CHB][hapmap] |
| rs7569075 | 0.82[CHB][hapmap] |
| rs7596874 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs7597429 | 0.81[CHB][hapmap] |
| rs7601415 | 0.81[CHB][hapmap] |
| rs936027 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834357 | chr2:125258157-125421507 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv834359 | chr2:125367872-125536022 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv428727 | chr2:125372897-125512949 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
