Variant report

Variant	rs1869500
Chromosome Location	chr2:125437070-125437071
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10183809	0.94[ASN][1000 genomes]
rs10202904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10496638	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs11123057	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs11676516	0.94[ASN][1000 genomes]
rs11681479	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs11684957	0.87[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.89[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs11687803	0.94[ASN][1000 genomes]
rs12711689	1.00[CHB][hapmap]
rs12711690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13022965	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs13026562	1.00[CHB][hapmap]
rs13033906	0.81[CHB][hapmap]
rs13385718	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs13386176	1.00[CHB][hapmap]
rs13392284	0.94[ASN][1000 genomes]
rs13399532	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[ASN][1000 genomes]
rs13413315	1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[ASN][1000 genomes]
rs13415836	1.00[CHB][hapmap]
rs13432730	1.00[CHB][hapmap]
rs1504015	0.81[CEU][hapmap]
rs17011871	1.00[CHB][hapmap]
rs17011873	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs17011877	1.00[CHB][hapmap]
rs1993274	0.84[YRI][hapmap]
rs34193160	0.94[ASN][1000 genomes]
rs34299668	0.94[ASN][1000 genomes]
rs35661599	0.94[ASN][1000 genomes]
rs35773922	0.94[ASN][1000 genomes]
rs36036896	0.94[ASN][1000 genomes]
rs4848258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4848965	0.81[CHB][hapmap]
rs6541968	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs66814044	0.93[ASN][1000 genomes]
rs6710630	0.81[CHB][hapmap]
rs6739399	0.81[CHB][hapmap]
rs721520	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7567761	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7567777	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[ASN][1000 genomes]
rs7568564	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs7569075	1.00[CHB][hapmap]
rs7582697	0.88[CHB][hapmap];0.95[CHD][hapmap]
rs7597429	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7601415	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7603818	0.86[MKK][hapmap];0.80[YRI][hapmap]
rs9677815	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125436800-125439800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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