Variant report
| Variant | rs11124563 |
|---|---|
| Chromosome Location | chr2:37391704-37391705 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:37382496..37385502-chr2:37391173..37393698,3 | K562 | blood: | |
| 2 | chr2:37390704..37393627-chr2:37422874..37425505,2 | K562 | blood: | |
| 3 | chr2:37375543..37378467-chr2:37391547..37394733,3 | MCF-7 | breast: | |
| 4 | chr2:37383207..37386416-chr2:37387973..37392066,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000138068 | Chromatin interaction |
| ENSG00000218739 | Chromatin interaction |
| ENSG00000224891 | Chromatin interaction |
| ENSG00000055332 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11674468 | 0.80[AMR][1000 genomes] |
| rs11674946 | 0.89[ASN][1000 genomes] |
| rs11691674 | 0.80[AMR][1000 genomes] |
| rs11692043 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11692051 | 0.84[ASN][1000 genomes] |
| rs12997228 | 0.80[AMR][1000 genomes] |
| rs55732806 | 0.80[AMR][1000 genomes] |
| rs55877960 | 0.83[ASN][1000 genomes] |
| rs56006332 | 0.80[AMR][1000 genomes] |
| rs56049206 | 0.80[AMR][1000 genomes] |
| rs56311719 | 0.80[AMR][1000 genomes] |
| rs58440283 | 0.80[AMR][1000 genomes] |
| rs62133149 | 0.83[ASN][1000 genomes] |
| rs62133150 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62134961 | 0.80[AMR][1000 genomes] |
| rs62134992 | 0.80[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
