Variant report

Variant	rs55877960
Chromosome Location	chr2:37389136-37389137
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr2:37389107-37389270	HepG2	liver:	n/a	n/a
2	RAD21	chr2:37389111-37389315	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAFK	chr2:37389015-37389151	HepG2	liver:	n/a	n/a
4	RAD21	chr2:37389084-37389345	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr2:37389128-37389220	HepG2	liver:	n/a	n/a
6	RAD21	chr2:37388993-37389294	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37382848..37386165-chr2:37386168..37391618,9	MCF-7	breast:
2	chr2:37387188..37389991-chr2:37393391..37396132,3	MCF-7	breast:
3	chr2:37383824..37387146-chr2:37387589..37390750,4	K562	blood:
4	chr2:37383207..37386416-chr2:37387973..37392066,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11124563	0.83[ASN][1000 genomes]
rs11674468	0.81[ASN][1000 genomes]
rs11674946	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11687555	0.82[EUR][1000 genomes]
rs11691674	0.81[ASN][1000 genomes]
rs11692043	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11692051	0.82[ASN][1000 genomes]
rs55732806	0.81[ASN][1000 genomes]
rs56006332	0.81[ASN][1000 genomes]
rs56049206	0.81[ASN][1000 genomes]
rs56311719	0.81[ASN][1000 genomes]
rs56391624	0.81[ASN][1000 genomes]
rs62133149	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62133150	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62134961	0.80[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37388600-37389400	Enhancers	HepG2	liver
2	chr2:37389000-37390400	Enhancers	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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