Variant report

Variant	rs11129030
Chromosome Location	chr3:21962660-21962661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10433570	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10510521	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10865774	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10865775	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10865776	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10865777	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10865778	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10865780	0.82[AFR][1000 genomes]
rs11129029	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1120052	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11714007	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12487611	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12487653	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12489286	0.80[AMR][1000 genomes]
rs12490987	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12491046	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12493892	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12496539	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13072115	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13076554	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13077139	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13078547	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13091957	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13091998	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13092149	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13092430	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13096987	0.82[AMR][1000 genomes]
rs13097724	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13097840	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1351323	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1479961	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1479967	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1479986	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1479987	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1479988	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1479989	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1564411	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17010120	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17010126	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17010229	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34164902	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34598190	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34718882	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34756955	0.81[EUR][1000 genomes]
rs34904582	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35338441	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs36015330	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4094000	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4350938	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4355303	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4370048	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6550633	0.81[EUR][1000 genomes]
rs66575668	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67108462	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs67326109	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7430341	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7621368	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7623835	0.84[AFR][1000 genomes]
rs7623923	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7635217	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7635399	0.83[AFR][1000 genomes]
rs7635489	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7635497	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7636487	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7642727	0.89[AMR][1000 genomes]
rs7645483	0.82[AMR][1000 genomes]
rs7646871	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7646883	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7646975	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs8179942	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8179943	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8180016	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8180026	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8180049	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834632	chr3:21803941-21974082	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv834633	chr3:21918264-22088338	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv876614	chr3:21919039-21994022	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv876615	chr3:21941259-21965999	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv876616	chr3:21946847-22310622	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876617	chr3:21955784-22310622	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1003934	chr3:21960795-21999895	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21960400-21963000	Enhancers	NHDF-Ad	bronchial
2	chr3:21960800-21963000	Enhancers	NHLF	lung

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