Variant report

Variant	rs7635399
Chromosome Location	chr3:21956986-21956987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21939959..21942443-chr3:21956783..21959351,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10433570	0.99[AFR][1000 genomes]
rs10510521	0.99[AFR][1000 genomes]
rs10865774	0.99[AFR][1000 genomes]
rs10865775	0.99[AFR][1000 genomes]
rs10865776	0.99[AFR][1000 genomes]
rs10865777	0.99[AFR][1000 genomes]
rs10865778	0.99[AFR][1000 genomes]
rs10865780	0.87[AFR][1000 genomes]
rs11129029	0.99[AFR][1000 genomes]
rs11129030	0.83[AFR][1000 genomes]
rs1120052	0.96[AFR][1000 genomes]
rs11714007	0.99[AFR][1000 genomes]
rs12487611	0.99[AFR][1000 genomes]
rs12487653	0.99[AFR][1000 genomes]
rs12489286	0.83[AFR][1000 genomes]
rs12490987	0.99[AFR][1000 genomes]
rs12491046	0.97[AFR][1000 genomes]
rs12493892	0.99[AFR][1000 genomes]
rs12496539	0.99[AFR][1000 genomes]
rs12629131	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13072115	0.96[AFR][1000 genomes]
rs13076554	0.96[AFR][1000 genomes]
rs13077139	0.96[AFR][1000 genomes]
rs13078547	0.97[AFR][1000 genomes]
rs13091957	0.96[AFR][1000 genomes]
rs13091998	0.96[AFR][1000 genomes]
rs13092149	0.96[AFR][1000 genomes]
rs13092430	0.96[AFR][1000 genomes]
rs13096987	0.94[AFR][1000 genomes]
rs13097724	0.96[AFR][1000 genomes]
rs13097840	0.96[AFR][1000 genomes]
rs1351323	0.99[AFR][1000 genomes]
rs1479961	0.98[AFR][1000 genomes]
rs1479967	0.99[AFR][1000 genomes]
rs1479986	0.96[AFR][1000 genomes]
rs1479987	0.96[AFR][1000 genomes]
rs1479988	0.99[AFR][1000 genomes]
rs1479989	0.99[AFR][1000 genomes]
rs1553084	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1564411	0.99[AFR][1000 genomes]
rs17010120	0.97[AFR][1000 genomes]
rs17010126	0.99[AFR][1000 genomes]
rs17010229	0.96[AFR][1000 genomes]
rs34164902	0.99[AFR][1000 genomes]
rs34598190	0.92[AFR][1000 genomes]
rs34718882	0.96[AFR][1000 genomes]
rs34904582	0.96[AFR][1000 genomes]
rs35338441	0.99[AFR][1000 genomes]
rs35976399	0.90[AFR][1000 genomes]
rs36015330	0.96[AFR][1000 genomes]
rs4094000	0.99[AFR][1000 genomes]
rs4350938	0.98[AFR][1000 genomes]
rs4355303	0.97[AFR][1000 genomes]
rs4370048	0.99[AFR][1000 genomes]
rs55729155	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6550633	0.96[YRI][hapmap]
rs6550634	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66575668	0.96[AFR][1000 genomes]
rs66924915	0.81[ASN][1000 genomes]
rs67031262	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67108462	0.99[AFR][1000 genomes]
rs67326109	0.99[AFR][1000 genomes]
rs7430341	0.99[AFR][1000 genomes]
rs7621368	0.83[AFR][1000 genomes]
rs7623835	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7623923	0.99[AFR][1000 genomes]
rs7635217	0.99[AFR][1000 genomes]
rs7635391	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7635489	0.99[AFR][1000 genomes]
rs7635497	0.99[AFR][1000 genomes]
rs7636487	0.99[AFR][1000 genomes]
rs7645483	0.92[AFR][1000 genomes]
rs7646871	0.97[AFR][1000 genomes]
rs7646883	0.99[AFR][1000 genomes]
rs7646975	0.99[AFR][1000 genomes]
rs7651606	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8179942	0.99[AFR][1000 genomes]
rs8179943	0.99[AFR][1000 genomes]
rs8180016	0.99[AFR][1000 genomes]
rs8180026	0.99[AFR][1000 genomes]
rs8180049	0.99[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834632	chr3:21803941-21974082	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1003085	chr3:21887971-22415107	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv834633	chr3:21918264-22088338	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv876614	chr3:21919039-21994022	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv998906	chr3:21921707-21962293	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1014821	chr3:21929218-21962293	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv876615	chr3:21941259-21965999	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv876616	chr3:21946847-22310622	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv876617	chr3:21955784-22310622	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21954400-21960800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:21954800-21957000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr3:21955400-21960600	Weak transcription	NH-A	brain
4	chr3:21955600-21960600	Weak transcription	Fetal Stomach	stomach
5	chr3:21955600-21960800	Weak transcription	NHLF	lung
6	chr3:21955800-21961200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:21956200-21960600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:21956400-21960800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:21956400-21960800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:21956600-21960400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:21956600-21960400	Weak transcription	NHDF-Ad	bronchial
12	chr3:21956800-21957400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:21956800-21957400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:21956800-21957400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr3:21956800-21960400	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links