Variant report

Variant	rs11130543
Chromosome Location	chr3:56736942-56736943
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:56736568..56737216-chr3:56833111..56833995,3	MCF-7	breast:
2	chr3:56736327..56737140-chr3:57022655..57023541,4	MCF-7	breast:
3	chr3:56736462..56736971-chr3:56833448..56834355,2	MCF-7	breast:
4	chr3:56736341..56737233-chr3:57022591..57023531,10	K562	blood:
5	chr3:56736190..56737159-chr3:57022630..57023612,7	MCF-7	breast:
6	chr3:56736663..56737335-chr3:56833565..56834496,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2046823	0.86[JPT][hapmap]
rs3772219	0.88[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs4681794	0.84[CEU][hapmap];0.86[JPT][hapmap]
rs6445817	0.92[EUR][1000 genomes]
rs6445818	0.93[EUR][1000 genomes]
rs6445819	0.90[EUR][1000 genomes]
rs6445821	0.90[EUR][1000 genomes]
rs68072945	0.88[EUR][1000 genomes]
rs7433556	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7618024	0.83[YRI][hapmap]
rs7631008	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv237149	chr3:56732922-56738481	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11130543	ARHGEF3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56729800-56738600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:56730000-56738600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:56730400-56738600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:56731200-56738600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:56731200-56738600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:56731200-56738600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:56733400-56738600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:56734800-56756400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:56736400-56737000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:56736400-56737000	Enhancers	Brain Cingulate Gyrus	brain
11	chr3:56736400-56737000	Enhancers	Fetal Muscle Leg	muscle
12	chr3:56736400-56737000	Enhancers	Placenta	Placenta
13	chr3:56736400-56737000	Enhancers	Fetal Thymus	thymus
14	chr3:56736400-56737200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:56736400-56737200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr3:56736400-56737200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:56736400-56737200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr3:56736400-56737200	Enhancers	Fetal Brain Male	brain
19	chr3:56736400-56737200	Enhancers	Fetal Muscle Trunk	muscle
20	chr3:56736400-56737200	Enhancers	Fetal Stomach	stomach
21	chr3:56736400-56737200	Enhancers	Dnd41	blood
22	chr3:56736400-56737200	Enhancers	HepG2	liver
23	chr3:56736400-56739400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr3:56736400-56740000	Enhancers	Primary T cells fromperipheralblood	blood
25	chr3:56736800-56737000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr3:56736800-56737200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:56736800-56737200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:56736800-56737200	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr3:56736800-56737200	Enhancers	Brain Hippocampus Middle	brain
30	chr3:56736800-56737200	Enhancers	Colon Smooth Muscle	Colon
31	chr3:56736800-56737200	Enhancers	Fetal Lung	lung

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