Variant report

Variant	rs6445821
Chromosome Location	chr3:56754233-56754234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11130543	0.90[EUR][1000 genomes]
rs2046823	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3772218	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3772219	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4681794	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6445817	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6445818	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6445819	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68072945	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7631008	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7634907	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56734800-56756400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:56739400-56758600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr3:56752000-56756800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:56752000-56758600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:56752000-56758800	Weak transcription	Thymus	Thymus
6	chr3:56752200-56757200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:56752400-56755400	Weak transcription	Primary T cells from cord blood	blood
8	chr3:56752400-56755400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:56752400-56756600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:56752400-56756600	Weak transcription	Fetal Thymus	thymus
11	chr3:56752400-56756800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:56752400-56757000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr3:56752600-56755000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:56752600-56755600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:56752600-56757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr3:56752600-56758600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:56752600-56758600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr3:56752800-56755200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr3:56752800-56757000	Weak transcription	Dnd41	blood
20	chr3:56753000-56758600	Weak transcription	HSMM	muscle
21	chr3:56753200-56758800	Weak transcription	Fetal Muscle Leg	muscle
22	chr3:56753200-56759400	Weak transcription	Brain Anterior Caudate	brain
23	chr3:56753400-56766200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:56753600-56757000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:56753600-56758000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:56753600-56759200	Weak transcription	Fetal Stomach	stomach
27	chr3:56753600-56763000	Weak transcription	Brain Substantia Nigra	brain
28	chr3:56753800-56758800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:56753800-56760800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:56754200-56756400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:56754200-56757200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr3:56754200-56762200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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