Variant report

Variant	rs68072945
Chromosome Location	chr3:56737268-56737269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11130543	0.88[EUR][1000 genomes]
rs11712256	0.87[AFR][1000 genomes]
rs2046823	0.83[ASN][1000 genomes]
rs3772218	0.83[ASN][1000 genomes]
rs3772219	0.85[ASN][1000 genomes]
rs4681794	0.85[ASN][1000 genomes]
rs6445817	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6445818	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6445819	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6445821	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7631008	0.83[ASN][1000 genomes]
rs7634907	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv237149	chr3:56732922-56738481	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56729800-56738600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:56730000-56738600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:56730400-56738600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:56731200-56738600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:56731200-56738600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:56731200-56738600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr3:56733400-56738600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:56734800-56756400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:56736400-56739400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:56736400-56740000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:56737000-56738800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:56737200-56738400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:56737200-56738600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:56737200-56738600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr3:56737200-56738600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr3:56737200-56738600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:56737200-56738600	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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