The 2.0 version of rSNPBase

Variant report

Variant rs3772218
Chromosome Location chr3:56782813-56782814
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:56754400-56783200 Weak transcription Stomach Mucosa stomach
2 chr3:56757000-56786400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
3 chr3:56757600-56792200 Weak transcription Hela-S3 cervix
4 chr3:56758600-56792200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr3:56759400-56784000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr3:56759800-56790400 Strong transcription Dnd41 blood
7 chr3:56760800-56783000 Weak transcription Osteobl bone
8 chr3:56760800-56788800 Strong transcription Fetal Thymus thymus
9 chr3:56762000-56788400 Weak transcription Colonic Mucosa Colon
10 chr3:56763600-56784200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr3:56763800-56789000 Weak transcription Small Intestine intestine
12 chr3:56763800-56790200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr3:56763800-56792800 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr3:56764000-56783200 Weak transcription HSMMtube muscle
15 chr3:56764000-56783400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr3:56764000-56786600 Weak transcription Aorta Aorta
17 chr3:56764000-56788800 Weak transcription Fetal Heart heart
18 chr3:56764000-56789000 Weak transcription Psoas Muscle Psoas
19 chr3:56764000-56793400 Weak transcription Gastric stomach
20 chr3:56764000-56815800 Weak transcription Fetal Intestine Small intestine
21 chr3:56766200-56788200 Weak transcription Duodenum Mucosa Duodenum
22 chr3:56766600-56785800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
23 chr3:56767400-56783000 Strong transcription Primary hematopoietic stem cells short term culture blood
24 chr3:56767400-56792600 Weak transcription HUES6 Cell Line embryonic stem cell
25 chr3:56767600-56783000 Weak transcription NHEK skin
26 chr3:56768400-56797600 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr3:56769000-56785200 Strong transcription Breast Myoepithelial Primary Cells Breast
28 chr3:56770800-56787200 Strong transcription Primary T cells from cord blood blood
29 chr3:56774400-56785000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr3:56774600-56784400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr3:56774600-56787400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr3:56775000-56792600 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr3:56775400-56785400 Strong transcription Primary B cells from peripheral blood blood
34 chr3:56775600-56783400 Weak transcription Muscle Satellite Cultured Cells --
35 chr3:56775800-56783800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr3:56775800-56788800 Strong transcription Thymus Thymus
37 chr3:56776000-56783200 Strong transcription HMEC breast
38 chr3:56776400-56783600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr3:56777200-56784400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr3:56777200-56787400 Strong transcription Fetal Adrenal Gland Adrenal Gland
41 chr3:56777400-56788400 Strong transcription Fetal Muscle Trunk muscle
42 chr3:56778200-56785200 Strong transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr3:56778400-56784400 Strong transcription Primary T helper naive cells from peripheral blood blood
44 chr3:56778400-56786400 Strong transcription Primary T regulatory cells fromperipheralblood blood
45 chr3:56778600-56785400 Strong transcription Primary T helper cells fromperipheralblood blood
46 chr3:56778800-56785200 Strong transcription Primary T cells fromperipheralblood blood
47 chr3:56779000-56783800 Strong transcription HSMM muscle
48 chr3:56779000-56792600 Weak transcription Placenta Amnion Placenta Amnion
49 chr3:56779200-56785400 Strong transcription Primary T helper naive cells fromperipheralblood blood
50 chr3:56779400-56783000 Weak transcription Liver Liver

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Last update: Aug 31, 2015