Variant report

Variant	rs11133366
Chromosome Location	chr4:56078923-56078924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10016924	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1158370	0.85[YRI][hapmap]
rs11723072	0.87[EUR][1000 genomes]
rs11727226	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11729926	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12503240	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1458827	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1458828	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1458833	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1531293	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1870376	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1993583	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2125487	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2199112	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2899026	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3986296	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6554240	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6857734	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9991746	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3396674	chr4:56075095-56079793	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56078400-56080600	Weak transcription	Brain Anterior Caudate	brain
2	chr4:56078800-56081600	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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