Variant report

Variant	rs1158370
Chromosome Location	chr4:56184295-56184296
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10011355	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028745	1.00[AMR][1000 genomes]
rs12716019	1.00[AMR][1000 genomes]
rs1380065	1.00[AMR][1000 genomes]
rs1458821	1.00[AMR][1000 genomes]
rs1968771	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2168946	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2175641	1.00[AMR][1000 genomes]
rs2412636	1.00[AMR][1000 genomes]
rs2459221	1.00[AMR][1000 genomes]
rs556776	1.00[AMR][1000 genomes]
rs6554250	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6855258	1.00[AMR][1000 genomes]
rs6857669	1.00[AMR][1000 genomes]
rs7666097	0.82[YRI][hapmap]
rs977061	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56180800-56184800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:56180800-56185800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:56180800-56186800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:56181000-56184800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:56181000-56188200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:56181000-56188400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:56184000-56185800	Enhancers	Stomach Mucosa	stomach
8	chr4:56184200-56186200	Enhancers	HUVEC	blood vessel
9	chr4:56184200-56186400	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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