Variant report

Variant	rs2412636
Chromosome Location	chr4:56023410-56023411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10011355	1.00[AMR][1000 genomes]
rs10027862	1.00[AMR][1000 genomes]
rs10028745	1.00[AMR][1000 genomes]
rs1158370	1.00[AMR][1000 genomes]
rs12716019	1.00[AMR][1000 genomes]
rs1380065	1.00[AMR][1000 genomes]
rs1380070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1458821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1543930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1543931	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1551639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1870380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1968771	1.00[AMR][1000 genomes]
rs2168946	1.00[AMR][1000 genomes]
rs4352535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57190330	1.00[AMR][1000 genomes]
rs59384774	1.00[AMR][1000 genomes]
rs6554250	1.00[AMR][1000 genomes]
rs6824124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6826761	1.00[AMR][1000 genomes]
rs6835605	1.00[AMR][1000 genomes]
rs6855258	1.00[AMR][1000 genomes]
rs6857669	1.00[AMR][1000 genomes]
rs7666097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56021400-56023600	Weak transcription	HUVEC	blood vessel
2	chr4:56021600-56025600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:56023400-56023600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
4	chr4:56023400-56023600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:56023400-56023600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:56023400-56023800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:56023400-56024400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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