Variant report

Variant	rs4352535
Chromosome Location	chr4:55992527-55992528
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:55992513-55992697	IMR90	lung:	n/a	chr4:55992607-55992620 chr4:55992609-55992618 chr4:55992607-55992618
2	NR3C1	chr4:55992444-55992697	A549	lung:	n/a	n/a
3	ZNF263	chr4:55992085-55992793	HEK293-T-REx	kidney:	n/a	chr4:55992533-55992542
4	CEBPB	chr4:55992499-55992702	K562	blood:	n/a	chr4:55992607-55992620 chr4:55992609-55992618 chr4:55992607-55992618
5	MYC	chr4:55992487-55992841	MCF10A-Er-Src	breast:	n/a	n/a
6	MAX	chr4:55992523-55992736	NB4	blood:	n/a	n/a
7	SIN3A	chr4:55989949-55992606	H1-hESC	embryonic stem cell:	n/a	chr4:55992582-55992596 chr4:55990281-55990291 chr4:55990226-55990236 chr4:55991604-55991617
8	MAX	chr4:55992149-55992743	H1-hESC	embryonic stem cell:	n/a	n/a
9	CEBPB	chr4:55992512-55992723	K562	blood:	n/a	chr4:55992607-55992620 chr4:55992609-55992618 chr4:55992607-55992618
10	CTBP2	chr4:55991292-55992711	H1-hESC	embryonic stem cell:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDR-3	chr4:55992347-55992629	expReg_chr4_2609_-

Variant related genes	Relation type
KDR	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10011355	1.00[AMR][1000 genomes]
rs10027862	1.00[AMR][1000 genomes]
rs12716019	1.00[AMR][1000 genomes]
rs1380065	1.00[AMR][1000 genomes]
rs1380070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1458821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1543930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1543931	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1551639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1870380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1968771	1.00[AMR][1000 genomes]
rs2168946	1.00[AMR][1000 genomes]
rs2412636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57190330	1.00[AMR][1000 genomes]
rs59384774	1.00[AMR][1000 genomes]
rs60067051	1.00[AMR][1000 genomes]
rs6554250	1.00[AMR][1000 genomes]
rs6824124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6826761	1.00[AMR][1000 genomes]
rs6835605	1.00[AMR][1000 genomes]
rs6855258	1.00[AMR][1000 genomes]
rs6857669	1.00[AMR][1000 genomes]
rs73816854	1.00[AMR][1000 genomes]
rs73816855	1.00[AMR][1000 genomes]
rs73816856	1.00[AMR][1000 genomes]
rs7666097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55988600-55992600	Active TSS	H9 Cell Line	embryonic stem cell
2	chr4:55989800-55992800	Bivalent/Poised TSS	Fetal Kidney	kidney
3	chr4:55990200-55992600	Bivalent/Poised TSS	Ovary	ovary
4	chr4:55990600-55992600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr4:55990600-55992600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr4:55990600-55992600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:55990800-55992600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
8	chr4:55991000-55992600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:55991000-55992600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
10	chr4:55991200-55992600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:55991200-55992600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
12	chr4:55991400-55992600	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr4:55991400-55992600	Bivalent Enhancer	Fetal Brain Male	brain
14	chr4:55991400-55992800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:55991600-55992600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
16	chr4:55991600-55992600	Bivalent Enhancer	Stomach Mucosa	stomach
17	chr4:55991800-55992600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:55991800-55992600	Bivalent Enhancer	Liver	Liver
19	chr4:55991800-55992600	Bivalent/Poised TSS	HSMMtube	muscle
20	chr4:55992000-55992600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:55992000-55992600	Flanking Active TSS	HUVEC	blood vessel
22	chr4:55992000-55992600	Flanking Active TSS	NH-A	brain
23	chr4:55992000-55992800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
24	chr4:55992200-55992600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:55992200-55992600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:55992200-55992600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
27	chr4:55992200-55992600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:55992200-55992600	Active TSS	Colon Smooth Muscle	Colon
29	chr4:55992200-55992600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
30	chr4:55992200-55992600	Flanking Bivalent TSS/Enh	Fetal Heart	heart
31	chr4:55992200-55992600	Flanking Bivalent TSS/Enh	Fetal Lung	lung
32	chr4:55992200-55992600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
33	chr4:55992200-55992600	Bivalent Enhancer	Placenta	Placenta
34	chr4:55992200-55992600	Bivalent Enhancer	Fetal Thymus	thymus
35	chr4:55992200-55992600	Enhancers	Lung	lung
36	chr4:55992200-55992600	Enhancers	Spleen	Spleen
37	chr4:55992200-55992800	Bivalent/Poised TSS	NHLF	lung
38	chr4:55992400-55992600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr4:55992400-55992600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:55992400-55992600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:55992400-55992600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:55992400-55992600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr4:55992400-55992600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr4:55992400-55992600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:55992400-55992600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr4:55992400-55992600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
47	chr4:55992400-55992600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
48	chr4:55992400-55992600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
49	chr4:55992400-55992600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:55992400-55992600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

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