Variant report
| Variant | rs1380065 |
|---|---|
| Chromosome Location | chr4:56028966-56028967 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:56023096..56025181-chr4:56027866..56029922,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10011355 | 1.00[AMR][1000 genomes] |
| rs10027862 | 1.00[AMR][1000 genomes] |
| rs10028745 | 1.00[AMR][1000 genomes] |
| rs1158370 | 1.00[AMR][1000 genomes] |
| rs12716019 | 1.00[AMR][1000 genomes] |
| rs1380070 | 1.00[AMR][1000 genomes] |
| rs1458821 | 1.00[AMR][1000 genomes] |
| rs1543930 | 1.00[AMR][1000 genomes] |
| rs1543931 | 1.00[AMR][1000 genomes] |
| rs1551639 | 1.00[AMR][1000 genomes] |
| rs1870380 | 1.00[AMR][1000 genomes] |
| rs1968771 | 1.00[AMR][1000 genomes] |
| rs2168946 | 1.00[AMR][1000 genomes] |
| rs2412636 | 1.00[AMR][1000 genomes] |
| rs4352535 | 1.00[AMR][1000 genomes] |
| rs57190330 | 1.00[AMR][1000 genomes] |
| rs59384774 | 1.00[AMR][1000 genomes] |
| rs6554250 | 1.00[AMR][1000 genomes] |
| rs6824124 | 1.00[AMR][1000 genomes] |
| rs6826761 | 1.00[AMR][1000 genomes] |
| rs6835605 | 1.00[AMR][1000 genomes] |
| rs6855258 | 1.00[AMR][1000 genomes] |
| rs6857669 | 1.00[AMR][1000 genomes] |
| rs7666097 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv526344 | chr4:55522488-56231119 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:56027400-56029800 | Weak transcription | HUVEC | blood vessel |
