Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10011355	1.00[AMR][1000 genomes]
rs10027862	1.00[AMR][1000 genomes]
rs12716019	1.00[AMR][1000 genomes]
rs1380065	1.00[AMR][1000 genomes]
rs1380070	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1458821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1543930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1543931	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1551639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1968771	1.00[AMR][1000 genomes]
rs2168946	1.00[AMR][1000 genomes]
rs2412636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4352535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57190330	1.00[AMR][1000 genomes]
rs59384774	1.00[AMR][1000 genomes]
rs60067051	1.00[AMR][1000 genomes]
rs6554250	1.00[AMR][1000 genomes]
rs6824124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6826761	1.00[AMR][1000 genomes]
rs6835605	1.00[AMR][1000 genomes]
rs6855258	1.00[AMR][1000 genomes]
rs6857669	1.00[AMR][1000 genomes]
rs73816854	1.00[AMR][1000 genomes]
rs73816855	1.00[AMR][1000 genomes]
rs73816856	1.00[AMR][1000 genomes]
rs7666097	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv3397514	chr4:55997895-55999893	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55997800-56003000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:55999000-56000200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:55999000-56000400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:55999000-56000600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:55999200-56000200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:55999400-56000600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:55999600-56000000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:55999600-56000400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:55999600-56000600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:55999600-56000600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:55999600-56002000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:55999600-56020600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:55999800-56001200	Enhancers	Fetal Lung	lung

Quick Search: