Variant report
| Variant | rs1380070 |
|---|---|
| Chromosome Location | chr4:56002591-56002592 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000134851 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10011355 | 1.00[AMR][1000 genomes] |
| rs10027862 | 1.00[AMR][1000 genomes] |
| rs12716019 | 1.00[AMR][1000 genomes] |
| rs1380065 | 1.00[AMR][1000 genomes] |
| rs1458821 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1543930 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1543931 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1551639 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1870380 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1968771 | 1.00[AMR][1000 genomes] |
| rs2168946 | 1.00[AMR][1000 genomes] |
| rs2412636 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4352535 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57190330 | 1.00[AMR][1000 genomes] |
| rs59384774 | 1.00[AMR][1000 genomes] |
| rs60067051 | 1.00[AMR][1000 genomes] |
| rs6554250 | 1.00[AMR][1000 genomes] |
| rs6824124 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6826761 | 1.00[AMR][1000 genomes] |
| rs6835605 | 1.00[AMR][1000 genomes] |
| rs6855258 | 1.00[AMR][1000 genomes] |
| rs6857669 | 1.00[AMR][1000 genomes] |
| rs73816854 | 1.00[AMR][1000 genomes] |
| rs73816855 | 1.00[AMR][1000 genomes] |
| rs73816856 | 1.00[AMR][1000 genomes] |
| rs7666097 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv526344 | chr4:55522488-56231119 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv829939 | chr4:55856771-56005011 | Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:55997800-56003000 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr4:55999600-56020600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
