Variant report

Variant	rs1113478
Chromosome Location	chr13:90110388-90110389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1158015	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1158016	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1199479	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12584227	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12874844	0.81[EUR][1000 genomes]
rs1504437	0.81[EUR][1000 genomes]
rs1504438	0.84[EUR][1000 genomes]
rs1504439	0.80[EUR][1000 genomes]
rs17395268	0.81[EUR][1000 genomes]
rs35003959	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3736408	0.84[EUR][1000 genomes]
rs471682	0.99[ASN][1000 genomes]
rs4773474	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4773475	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs515212	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs572497	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs574402	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs617470	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs618484	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs620909	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs633976	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs657998	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs669093	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs671140	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7318774	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7332656	0.84[EUR][1000 genomes]
rs7996556	0.82[EUR][1000 genomes]
rs8001088	0.82[EUR][1000 genomes]
rs8001305	0.82[EUR][1000 genomes]
rs9301572	0.82[EUR][1000 genomes]
rs9522562	0.80[EUR][1000 genomes]
rs9555890	0.81[EUR][1000 genomes]
rs9555901	0.82[EUR][1000 genomes]
rs9555902	0.81[EUR][1000 genomes]
rs9560339	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9560340	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9560341	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9560355	0.84[EUR][1000 genomes]
rs9560356	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915862	chr13:89408920-90118030	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1040210	chr13:89584630-90156186	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1048574	chr13:89650680-90232894	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1044807	chr13:89991827-90263328	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039775	chr13:89995537-90260944	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv900860	chr13:90008941-90259291	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv428613	chr13:90012119-90165711	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv533455	chr13:90041897-90255725	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv900862	chr13:90067507-90129913	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv900863	chr13:90067507-90145824	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90106600-90111600	Enhancers	NHEK	skin
2	chr13:90107000-90111600	Enhancers	HMEC	breast
3	chr13:90107200-90110600	Enhancers	HUVEC	blood vessel
4	chr13:90107200-90111400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:90107200-90111400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:90108200-90111600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr13:90109600-90111200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:90109800-90110600	Enhancers	Hela-S3	cervix
9	chr13:90109800-90110800	Enhancers	Adipose Nuclei	Adipose
10	chr13:90109800-90111000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:90109800-90111200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:90110200-90110600	Flanking Active TSS	A549	lung

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