Variant report

Variant	rs11137172
Chromosome Location	chr9:140561630-140561631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr9:140561288-140561803	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAFK	chr9:140561390-140561879	H1-hESC	embryonic stem cell:	n/a	chr9:140561686-140561702 chr9:140561686-140561697 chr9:140561686-140561697
3	POLR2A	chr9:140561301-140561722	H1-hESC	embryonic stem cell:	n/a	n/a
4	SP1	chr9:140561177-140561935	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr9:140561540-140561690	GM12873	blood:	n/a	n/a
6	YY1	chr9:140561273-140562103	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr9:140561209-140561817	H1-hESC	embryonic stem cell:	n/a	n/a
8	CHD2	chr9:140561159-140561957	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAFK	chr9:140561545-140561867	HepG2	liver:	n/a	chr9:140561686-140561702 chr9:140561686-140561697 chr9:140561686-140561697
10	CTCF	chr9:140561500-140561650	GM12873	blood:	n/a	n/a
11	BHLHE40	chr9:140561467-140561729	GM12878	blood:	n/a	n/a
12	POU2F2	chr9:140561367-140561825	GM12891	blood:	n/a	chr9:140561681-140561691 chr9:140561682-140561689 chr9:140561680-140561690 chr9:140561681-140561689 chr9:140561681-140561690 chr9:140561681-140561691 chr9:140561680-140561692
13	POLR2A	chr9:140561340-140561721	H1-neurons	neurons:	n/a	n/a
14	ATF2	chr9:140561222-140562002	H1-hESC	embryonic stem cell:	n/a	n/a
15	USF2	chr9:140561229-140561757	H1-hESC	embryonic stem cell:	n/a	n/a
16	POLR2A	chr9:140561343-140561738	H1-hESC	embryonic stem cell:	n/a	n/a
17	TCF12	chr9:140561330-140561922	H1-hESC	embryonic stem cell:	n/a	n/a
18	MXI1	chr9:140561249-140562035	H1-hESC	embryonic stem cell:	n/a	n/a
19	MYC	chr9:140561286-140562141	H1-hESC	embryonic stem cell:	n/a	n/a
20	MAFK	chr9:140561599-140561861	IMR90	lung:	n/a	chr9:140561686-140561702 chr9:140561686-140561697 chr9:140561686-140561697
21	CHD1	chr9:140561230-140562174	H1-hESC	embryonic stem cell:	n/a	n/a
22	POLR2A	chr9:140560943-140562060	Raji	blood:	n/a	n/a
23	BACH1	chr9:140561065-140561826	H1-hESC	embryonic stem cell:	n/a	n/a
24	YY1	chr9:140561302-140562052	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr9:140560779-140562116	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr9:140561504-140561650	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr9:140561359-140561690	H1-hESC	embryonic stem cell:	n/a	n/a
28	HDAC2	chr9:140561322-140561784	H1-hESC	embryonic stem cell:	n/a	n/a
29	SIN3A	chr9:140561390-140561947	H1-hESC	embryonic stem cell:	n/a	n/a
30	MAX	chr9:140561295-140562046	H1-hESC	embryonic stem cell:	n/a	n/a
31	EP300	chr9:140561254-140561868	H1-hESC	embryonic stem cell:	n/a	n/a
32	SP4	chr9:140561318-140561746	H1-hESC	embryonic stem cell:	n/a	n/a
33	ZNF143	chr9:140561362-140561657	H1-hESC	embryonic stem cell:	n/a	n/a
34	TEAD4	chr9:140561366-140561948	H1-hESC	embryonic stem cell:	n/a	n/a
35	TEAD4	chr9:140561365-140562064	H1-hESC	embryonic stem cell:	n/a	n/a
36	GTF2F1	chr9:140560972-140561924	H1-hESC	embryonic stem cell:	n/a	n/a
37	SP1	chr9:140561234-140561981	H1-hESC	embryonic stem cell:	n/a	n/a
38	REST	chr9:140560789-140561948	H1-neurons	neurons:	n/a	n/a
39	TCF12	chr9:140561312-140561865	H1-hESC	embryonic stem cell:	n/a	n/a
40	NANOG	chr9:140561363-140561727	H1-hESC	embryonic stem cell:	n/a	chr9:140561680-140561689
41	POLR2A	chr9:140561432-140561821	H1-hESC	embryonic stem cell:	n/a	n/a
42	TBP	chr9:140561368-140561822	H1-hESC	embryonic stem cell:	n/a	n/a
43	JUN	chr9:140561411-140561822	H1-hESC	embryonic stem cell:	n/a	n/a
44	CEBPB	chr9:140561292-140561959	H1-hESC	embryonic stem cell:	n/a	n/a
45	TAF1	chr9:140561261-140561745	H1-hESC	embryonic stem cell:	n/a	n/a
46	USF1	chr9:140561380-140561797	H1-hESC	embryonic stem cell:	n/a	n/a
47	MAX	chr9:140561266-140562057	H1-hESC	embryonic stem cell:	n/a	n/a
48	MAX	chr9:140561242-140562063	H1-hESC	embryonic stem cell:	n/a	n/a
49	EBF1	chr9:140561430-140561770	GM12878	blood:	n/a	n/a
50	USF1	chr9:140561346-140561788	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
EHMT1	TF binding region

Extended variants
information (count: 118 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10123486	0.82[EUR][1000 genomes]
rs10217292	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10481734	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10732688	1.00[CHB][hapmap]
rs10746564	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10780178	0.93[AMR][1000 genomes]
rs10780179	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10780181	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10780182	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10780183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10780184	1.00[CHB][hapmap]
rs10867031	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs10867034	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10867035	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10867038	0.80[AMR][1000 genomes]
rs10867039	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10867040	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10867049	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10867050	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10867051	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10867052	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10867053	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10867054	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11137140	1.00[CHB][hapmap]
rs11137141	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes]
rs11137142	0.87[AMR][1000 genomes]
rs11137148	0.84[AMR][1000 genomes]
rs11137155	0.85[AMR][1000 genomes]
rs11137158	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes]
rs11137161	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11137163	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11137167	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11137169	0.82[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11137173	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11137177	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11137178	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11137182	0.82[AMR][1000 genomes]
rs12551649	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13286765	0.92[AMR][1000 genomes]
rs13287726	0.85[AMR][1000 genomes]
rs13296028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17496354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1776776	1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs1891628	1.00[CHB][hapmap]
rs2014103	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2094623	1.00[CHB][hapmap]
rs2257839	1.00[CHB][hapmap]
rs2282020	0.85[AMR][1000 genomes]
rs2297004	1.00[CHB][hapmap]
rs2353078	0.81[AMR][1000 genomes]
rs2501553	0.84[AMR][1000 genomes]
rs2501556	1.00[CHB][hapmap]
rs2501559	1.00[CHB][hapmap]
rs2501567	1.00[CHB][hapmap]
rs2501568	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes]
rs2501570	0.93[AMR][1000 genomes]
rs2987618	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2987621	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes]
rs35374891	0.84[AMR][1000 genomes]
rs3849856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3860888	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3895387	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4246177	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs4567119	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4962227	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs4962241	0.87[AMR][1000 genomes]
rs4979638	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4979651	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4979652	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4979653	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4979654	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4979656	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4979657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67499662	0.87[AMR][1000 genomes]
rs7020339	0.86[AMR][1000 genomes]
rs7024179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7043932	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs71510836	0.84[AMR][1000 genomes]
rs7389975	0.82[AMR][1000 genomes]
rs8181211	0.81[AMR][1000 genomes]
rs821313	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes]
rs821317	0.83[AMR][1000 genomes]
rs864747	0.82[AMR][1000 genomes]
rs9410111	0.84[AMR][1000 genomes]
rs9410112	0.80[AMR][1000 genomes]
rs9410114	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs975978	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
2	nsv531664	chr9:140110329-140725056	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	275 gene(s)	inside rSNPs	diseases
3	nsv531654	chr9:140110329-141033187	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	281 gene(s)	inside rSNPs	diseases
4	nsv932633	chr9:140240417-141053535	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
5	nsv1035524	chr9:140251014-140751633	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
6	nsv1053628	chr9:140260666-141005637	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
7	nsv534215	chr9:140286134-141008915	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	105 gene(s)	inside rSNPs	n/a
8	nsv1035388	chr9:140306746-140654768	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	96 gene(s)	inside rSNPs	n/a
9	nsv1039672	chr9:140343466-140707505	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	n/a
10	nsv540358	chr9:140343466-140707505	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	n/a
11	nsv1041512	chr9:140350404-140612859	Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
12	nsv540359	chr9:140350404-140612859	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	n/a
13	nsv616023	chr9:140372570-140602887	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
14	nsv531603	chr9:140378700-140590977	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	n/a
15	nsv531665	chr9:140378700-141073897	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	n/a
16	nsv868924	chr9:140407572-141053525	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	n/a
17	nsv1039933	chr9:140408112-141005637	Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	n/a
18	nsv531666	chr9:140409395-141015925	Weak transcription Active TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	n/a
19	nsv831763	chr9:140439831-140614021	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	n/a
20	esv3398333	chr9:140451462-140814795	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	n/a
21	nsv1052036	chr9:140452641-141018985	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
22	nsv540365	chr9:140452641-141018985	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
23	nsv949702	chr9:140466816-141027939	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	n/a
24	nsv531667	chr9:140468821-140936261	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	n/a
25	nsv531668	chr9:140492807-140986221	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	n/a
26	nsv531669	chr9:140514663-140852911	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	n/a
27	nsv1053192	chr9:140532404-141005637	Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	n/a
28	nsv540366	chr9:140532404-141005637	Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	n/a
29	nsv532478	chr9:140535164-140786943	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	n/a
30	nsv894676	chr9:140536098-140734161	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	n/a
31	nsv534573	chr9:140550908-140757122	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11137172	EHMT1	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140523400-140563400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:140527600-140563800	Weak transcription	Aorta	Aorta
3	chr9:140531000-140564800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:140534400-140563400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:140534600-140572600	Weak transcription	Small Intestine	intestine
6	chr9:140540200-140564800	Weak transcription	HMEC	breast
7	chr9:140543600-140564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:140548400-140567600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:140550400-140563400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr9:140555000-140571200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:140556200-140563800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:140557400-140562800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr9:140557400-140563000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:140557600-140561800	Enhancers	Stomach Mucosa	stomach
15	chr9:140557600-140564200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr9:140557800-140562800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:140558400-140565000	Weak transcription	HSMM	muscle
18	chr9:140558400-140566600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:140558600-140561800	Enhancers	Fetal Lung	lung
20	chr9:140558600-140562000	Enhancers	Pancreas	Pancrea
21	chr9:140558800-140562200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr9:140558800-140562600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr9:140559000-140562000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:140559000-140564400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr9:140559200-140561800	Enhancers	Fetal Kidney	kidney
26	chr9:140559200-140561800	Enhancers	Placenta	Placenta
27	chr9:140559200-140562000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:140559200-140562000	Enhancers	Brain Angular Gyrus	brain
29	chr9:140559200-140562000	Genic enhancers	Lung	lung
30	chr9:140559200-140562000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr9:140559200-140563000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:140559400-140562600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:140559400-140562600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
34	chr9:140559600-140562000	Enhancers	A549	lung
35	chr9:140559600-140562600	Enhancers	Primary T cells from cord blood	blood
36	chr9:140559600-140563600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr9:140559600-140567600	Weak transcription	Osteobl	bone
38	chr9:140559800-140561800	Flanking Active TSS	Stomach Smooth Muscle	stomach
39	chr9:140559800-140561800	Genic enhancers	Spleen	Spleen
40	chr9:140559800-140561800	Strong transcription	Dnd41	blood
41	chr9:140559800-140562000	Genic enhancers	Primary T cells fromperipheralblood	blood
42	chr9:140559800-140563600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:140560000-140561800	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr9:140560000-140561800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr9:140560000-140562000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:140560000-140562200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr9:140560000-140562800	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr9:140560000-140562800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr9:140560000-140563600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr9:140560000-140563600	Weak transcription	Rectal Mucosa Donor 31	rectum

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