Variant report

Variant	rs11140001
Chromosome Location	chr9:85879561-85879562
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10512138	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10867979	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11139998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139999	0.83[ASN][1000 genomes]
rs11140009	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11140010	0.86[CHB][hapmap]
rs12003055	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12005318	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12336693	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12339855	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12345712	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12376739	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1323778	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1323779	0.81[EUR][1000 genomes]
rs1323782	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323785	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17086124	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4395967	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs55707933	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56128787	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58579431	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6559718	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7034332	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7034639	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7034898	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7856762	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:85855000-85881400	Weak transcription	Adipose Nuclei	Adipose
3	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
5	chr9:85876200-85880400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:85876400-85880000	Weak transcription	Left Ventricle	heart
7	chr9:85876600-85880400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr9:85876600-85881400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:85877200-85881400	Weak transcription	Ovary	ovary
10	chr9:85877600-85880400	Enhancers	HUVEC	blood vessel
11	chr9:85877800-85881400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:85878000-85880600	Weak transcription	Right Atrium	heart
13	chr9:85878200-85881200	Weak transcription	Right Ventricle	heart
14	chr9:85879200-85880000	Enhancers	Psoas Muscle	Psoas
15	chr9:85879200-85881400	Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr9:85879400-85879800	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links