Variant report

Variant	rs12005318
Chromosome Location	chr9:85889468-85889469
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10512138	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11139998	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11139999	0.90[ASN][1000 genomes]
rs11140001	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12003055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12336693	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12339855	0.90[ASN][1000 genomes]
rs12345712	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12376739	0.90[ASN][1000 genomes]
rs1323778	0.85[EUR][1000 genomes]
rs1323779	0.85[EUR][1000 genomes]
rs1323782	0.85[EUR][1000 genomes]
rs1323785	0.86[EUR][1000 genomes]
rs17086124	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4395967	0.90[ASN][1000 genomes]
rs55707933	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56128787	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58579431	0.86[EUR][1000 genomes]
rs7034332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7034639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7034898	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7856762	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85854800-85890400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
4	chr9:85882000-85895800	Weak transcription	Fetal Kidney	kidney
5	chr9:85882000-85895800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:85882200-85889800	Weak transcription	Pancreas	Pancrea
7	chr9:85882200-85895800	Weak transcription	Gastric	stomach
8	chr9:85882200-85895800	Weak transcription	Ovary	ovary
9	chr9:85882200-85896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:85883200-85895000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:85884200-85912400	Weak transcription	HepG2	liver
12	chr9:85885200-85896600	Weak transcription	Brain Angular Gyrus	brain
13	chr9:85885400-85896200	Weak transcription	Spleen	Spleen
14	chr9:85885400-85896400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:85885600-85895200	Weak transcription	Psoas Muscle	Psoas
16	chr9:85887200-85889600	Weak transcription	Left Ventricle	heart
17	chr9:85887200-85895600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr9:85887200-85895800	Weak transcription	Fetal Heart	heart
19	chr9:85887200-85895800	Weak transcription	Right Ventricle	heart
20	chr9:85888600-85896200	Weak transcription	Fetal Brain Male	brain
21	chr9:85889000-85890400	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:85889400-85889800	Enhancers	Fetal Muscle Trunk	muscle
23	chr9:85889400-85890000	Strong transcription	Adipose Nuclei	Adipose
24	chr9:85889400-85890200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:85889400-85890200	Strong transcription	Fetal Stomach	stomach
26	chr9:85889400-85892600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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