Variant report

Variant	rs1323778
Chromosome Location	chr9:85906233-85906234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10512138	0.94[CEU][hapmap];0.81[CHB][hapmap]
rs10867979	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs11139998	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs11140001	0.91[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs11140009	0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.94[ASN][1000 genomes]
rs11140010	0.85[CHB][hapmap];0.91[ASN][1000 genomes]
rs12003055	0.85[EUR][1000 genomes]
rs12005318	0.85[EUR][1000 genomes]
rs12339855	0.81[CHB][hapmap]
rs12376739	0.81[CHB][hapmap]
rs1323779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323782	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs1323785	0.94[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs17086124	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4395967	0.81[CHB][hapmap]
rs55707933	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56128787	0.81[EUR][1000 genomes]
rs58579431	0.80[EUR][1000 genomes]
rs6559718	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs7034332	0.94[CEU][hapmap];0.81[CHB][hapmap];0.85[EUR][1000 genomes]
rs7034639	0.85[EUR][1000 genomes]
rs7034898	0.85[EUR][1000 genomes]
rs7856762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
3	chr9:85884200-85912400	Weak transcription	HepG2	liver
4	chr9:85895000-85912800	Weak transcription	Fetal Brain Female	brain
5	chr9:85896000-85913600	Weak transcription	Psoas Muscle	Psoas
6	chr9:85896000-85919800	Weak transcription	Lung	lung
7	chr9:85896400-85912600	Weak transcription	Gastric	stomach
8	chr9:85896400-85913400	Weak transcription	Brain Germinal Matrix	brain
9	chr9:85896600-85913000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr9:85896800-85910800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:85896800-85922800	Weak transcription	Spleen	Spleen
12	chr9:85897000-85912600	Weak transcription	Adipose Nuclei	Adipose
13	chr9:85897000-85912600	Weak transcription	Ovary	ovary
14	chr9:85897000-85912800	Weak transcription	Right Ventricle	heart
15	chr9:85897200-85912000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:85897200-85913000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr9:85897200-85919200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr9:85897200-85922000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:85897400-85914800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:85902400-85907800	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:85905600-85906800	Enhancers	Pancreas	Pancrea
22	chr9:85905800-85919000	Weak transcription	Fetal Stomach	stomach
23	chr9:85906000-85906600	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:85906000-85911600	Weak transcription	Left Ventricle	heart
25	chr9:85906200-85906400	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr9:85906200-85906800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:85906200-85906800	Enhancers	Fetal Kidney	kidney

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