Variant report

Variant	rs11140343
Chromosome Location	chr9:86669293-86669294
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10780645	0.87[ASN][1000 genomes]
rs11140337	0.87[ASN][1000 genomes]
rs11140338	0.87[ASN][1000 genomes]
rs11140344	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140349	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11531847	0.87[ASN][1000 genomes]
rs11533022	0.87[ASN][1000 genomes]
rs11533047	0.87[ASN][1000 genomes]
rs11535577	0.87[ASN][1000 genomes]
rs55692426	0.87[ASN][1000 genomes]
rs55714514	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv893514	chr9:86584160-86678917	Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv614762	chr9:86625243-86700593	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1045322	chr9:86666993-86701912	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86668600-86669600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr9:86668800-86671400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:86669000-86669400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:86669000-86669400	Weak transcription	Ovary	ovary
5	chr9:86669000-86670600	Enhancers	HepG2	liver
6	chr9:86669200-86669800	Enhancers	Liver	Liver
7	chr9:86669200-86673000	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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