Variant report

Variant	rs11140338
Chromosome Location	chr9:86659815-86659816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10780645	1.00[ASN][1000 genomes]
rs10868067	0.93[EUR][1000 genomes]
rs11140269	0.85[EUR][1000 genomes]
rs11140270	0.85[EUR][1000 genomes]
rs11140271	1.00[EUR][1000 genomes]
rs11140274	0.92[EUR][1000 genomes]
rs11140275	0.92[EUR][1000 genomes]
rs11140280	1.00[EUR][1000 genomes]
rs11140288	1.00[EUR][1000 genomes]
rs11140290	0.86[EUR][1000 genomes]
rs11140292	1.00[EUR][1000 genomes]
rs11140294	1.00[EUR][1000 genomes]
rs11140296	1.00[EUR][1000 genomes]
rs11140308	1.00[EUR][1000 genomes]
rs11140309	1.00[EUR][1000 genomes]
rs11140310	1.00[EUR][1000 genomes]
rs11140312	1.00[EUR][1000 genomes]
rs11140313	1.00[EUR][1000 genomes]
rs11140314	1.00[EUR][1000 genomes]
rs11140316	1.00[EUR][1000 genomes]
rs11140318	1.00[EUR][1000 genomes]
rs11140321	1.00[EUR][1000 genomes]
rs11140322	1.00[EUR][1000 genomes]
rs11140337	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140343	0.87[ASN][1000 genomes]
rs11140344	0.87[ASN][1000 genomes]
rs11140347	0.87[ASN][1000 genomes]
rs11531847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11533022	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11533047	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11535577	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11559387	0.85[EUR][1000 genomes]
rs12056961	1.00[EUR][1000 genomes]
rs12235653	1.00[EUR][1000 genomes]
rs12237056	1.00[EUR][1000 genomes]
rs12237297	1.00[EUR][1000 genomes]
rs2017558	1.00[EUR][1000 genomes]
rs3750407	1.00[EUR][1000 genomes]
rs55692426	1.00[ASN][1000 genomes]
rs55714514	1.00[ASN][1000 genomes]
rs59409125	1.00[EUR][1000 genomes]
rs60989495	0.86[EUR][1000 genomes]
rs73471357	1.00[EUR][1000 genomes]
rs9776332	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv893514	chr9:86584160-86678917	Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv614762	chr9:86625243-86700593	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86658600-86660200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:86659200-86660600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:86659600-86660600	Enhancers	HepG2	liver

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