Variant report

Variant	rs11140274
Chromosome Location	chr9:86476894-86476895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10868067	0.85[EUR][1000 genomes]
rs11140271	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11140275	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140280	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11140288	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140290	0.83[ASN][1000 genomes]
rs11140292	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140294	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140296	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140308	0.92[EUR][1000 genomes]
rs11140309	0.92[EUR][1000 genomes]
rs11140310	0.92[EUR][1000 genomes]
rs11140312	0.92[EUR][1000 genomes]
rs11140313	0.92[EUR][1000 genomes]
rs11140314	0.92[EUR][1000 genomes]
rs11140316	0.92[EUR][1000 genomes]
rs11140318	0.92[EUR][1000 genomes]
rs11140321	0.92[EUR][1000 genomes]
rs11140322	0.92[EUR][1000 genomes]
rs11140337	0.92[EUR][1000 genomes]
rs11140338	0.92[EUR][1000 genomes]
rs11531847	0.92[EUR][1000 genomes]
rs11533022	0.92[EUR][1000 genomes]
rs11533047	0.85[EUR][1000 genomes]
rs11535577	0.92[EUR][1000 genomes]
rs12056961	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12235653	0.92[EUR][1000 genomes]
rs12237056	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12237297	0.92[EUR][1000 genomes]
rs2017558	0.92[EUR][1000 genomes]
rs3750407	0.92[EUR][1000 genomes]
rs59409125	0.92[EUR][1000 genomes]
rs73471357	0.92[EUR][1000 genomes]
rs9776332	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv982312	chr9:86424154-86490046	Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv6590	chr9:86435603-86480442	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86460600-86518200	Weak transcription	Thymus	Thymus
2	chr9:86461600-86535400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:86461600-86535400	Weak transcription	Ovary	ovary
4	chr9:86462200-86535200	Weak transcription	Fetal Brain Female	brain
5	chr9:86462400-86482400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:86462600-86499200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:86462600-86500600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:86462600-86503800	Weak transcription	Dnd41	blood
9	chr9:86462600-86535200	Weak transcription	Brain Anterior Caudate	brain
10	chr9:86462800-86515000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:86462800-86518000	Weak transcription	Fetal Intestine Large	intestine
12	chr9:86462800-86518000	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links