Variant report

Variant	rs11140271
Chromosome Location	chr9:86466372-86466373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10868067	0.93[EUR][1000 genomes]
rs11140269	0.85[EUR][1000 genomes]
rs11140270	0.85[EUR][1000 genomes]
rs11140274	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11140275	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140280	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140288	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140290	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11140292	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140294	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140296	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140308	1.00[EUR][1000 genomes]
rs11140309	1.00[EUR][1000 genomes]
rs11140310	1.00[EUR][1000 genomes]
rs11140312	1.00[EUR][1000 genomes]
rs11140313	1.00[EUR][1000 genomes]
rs11140314	1.00[EUR][1000 genomes]
rs11140316	1.00[EUR][1000 genomes]
rs11140318	1.00[EUR][1000 genomes]
rs11140321	1.00[EUR][1000 genomes]
rs11140322	1.00[EUR][1000 genomes]
rs11140337	1.00[EUR][1000 genomes]
rs11140338	1.00[EUR][1000 genomes]
rs11531847	1.00[EUR][1000 genomes]
rs11533022	1.00[EUR][1000 genomes]
rs11533047	0.93[EUR][1000 genomes]
rs11535577	1.00[EUR][1000 genomes]
rs11559387	0.85[EUR][1000 genomes]
rs12056961	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12235653	1.00[EUR][1000 genomes]
rs12237056	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12237297	1.00[EUR][1000 genomes]
rs2017558	1.00[EUR][1000 genomes]
rs3750407	1.00[EUR][1000 genomes]
rs59409125	1.00[EUR][1000 genomes]
rs60989495	0.86[EUR][1000 genomes]
rs73471357	1.00[EUR][1000 genomes]
rs9776332	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv982312	chr9:86424154-86490046	Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv6590	chr9:86435603-86480442	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv8540	chr9:86458587-86470369	Strong transcription ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86447800-86470800	Weak transcription	Brain Germinal Matrix	brain
2	chr9:86452000-86467800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:86456600-86472600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:86457400-86468400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:86457400-86469000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:86459800-86466400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:86460000-86474000	Weak transcription	Adipose Nuclei	Adipose
8	chr9:86460600-86518200	Weak transcription	Thymus	Thymus
9	chr9:86461600-86535400	Weak transcription	Fetal Intestine Small	intestine
10	chr9:86461600-86535400	Weak transcription	Ovary	ovary
11	chr9:86462200-86466400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr9:86462200-86471200	Weak transcription	Liver	Liver
13	chr9:86462200-86475400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:86462200-86535200	Weak transcription	Fetal Brain Female	brain
15	chr9:86462400-86482400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:86462600-86468600	Weak transcription	Primary T cells from cord blood	blood
17	chr9:86462600-86469600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:86462600-86499200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:86462600-86500600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:86462600-86503800	Weak transcription	Dnd41	blood
21	chr9:86462600-86535200	Weak transcription	Brain Anterior Caudate	brain
22	chr9:86462800-86468600	Weak transcription	Placenta	Placenta
23	chr9:86462800-86471200	Weak transcription	Fetal Lung	lung
24	chr9:86462800-86515000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:86462800-86518000	Weak transcription	Fetal Intestine Large	intestine
26	chr9:86462800-86518000	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links