Variant report

Variant	rs11140321
Chromosome Location	chr9:86621855-86621856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86621080..86624737-chr9:86626977..86631058,3	MCF-7	breast:
2	chr9:86594505..86596949-chr9:86620921..86622582,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165119	Chromatin interaction
ENSG00000178966	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10868067	0.93[EUR][1000 genomes]
rs11140269	0.85[EUR][1000 genomes]
rs11140270	0.85[EUR][1000 genomes]
rs11140271	1.00[EUR][1000 genomes]
rs11140274	0.92[EUR][1000 genomes]
rs11140275	0.92[EUR][1000 genomes]
rs11140280	1.00[EUR][1000 genomes]
rs11140288	1.00[EUR][1000 genomes]
rs11140290	0.86[EUR][1000 genomes]
rs11140292	1.00[EUR][1000 genomes]
rs11140294	1.00[EUR][1000 genomes]
rs11140296	1.00[EUR][1000 genomes]
rs11140308	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11140309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140310	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140314	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140337	1.00[EUR][1000 genomes]
rs11140338	1.00[EUR][1000 genomes]
rs11531847	1.00[EUR][1000 genomes]
rs11533022	1.00[EUR][1000 genomes]
rs11533047	0.93[EUR][1000 genomes]
rs11535577	1.00[EUR][1000 genomes]
rs11559387	0.85[EUR][1000 genomes]
rs12056961	1.00[EUR][1000 genomes]
rs12235653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12237056	1.00[EUR][1000 genomes]
rs12237297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3750407	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59409125	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60989495	0.86[EUR][1000 genomes]
rs73471357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9776332	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv893514	chr9:86584160-86678917	Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv3328820	chr9:86613612-86634313	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86596400-86632400	Weak transcription	Spleen	Spleen
2	chr9:86597400-86628800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:86598800-86622400	Weak transcription	Brain Germinal Matrix	brain
4	chr9:86602000-86623200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:86602400-86627200	Weak transcription	Left Ventricle	heart
6	chr9:86604000-86622600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:86604000-86626200	Weak transcription	Pancreas	Pancrea
8	chr9:86604200-86623400	Weak transcription	Fetal Stomach	stomach
9	chr9:86605000-86622400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:86605400-86622200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:86606000-86624200	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:86607800-86622600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:86607800-86622800	Weak transcription	K562	blood
14	chr9:86611000-86623000	Weak transcription	Psoas Muscle	Psoas
15	chr9:86616800-86623800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:86617000-86622200	Weak transcription	Fetal Brain Female	brain
17	chr9:86617000-86622600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr9:86617000-86622800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:86617000-86622800	Weak transcription	Fetal Kidney	kidney
20	chr9:86617600-86624400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:86617600-86624800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr9:86617600-86625000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr9:86617800-86623600	Weak transcription	A549	lung
24	chr9:86617800-86625800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr9:86618200-86625400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr9:86618400-86625400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:86618800-86624400	Weak transcription	Aorta	Aorta
28	chr9:86619800-86624400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:86620200-86622200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:86620200-86622400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:86620200-86622800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr9:86620200-86623400	Weak transcription	Dnd41	blood
33	chr9:86621400-86622000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
34	chr9:86621800-86622000	ZNF genes & repeats	Fetal Muscle Trunk	muscle

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