Variant report

Variant	rs11140296
Chromosome Location	chr9:86538831-86538832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:86538824-86538874	HCM	heart:	n/a
2	chr9:86538824-86538874	HMEC	breast:	n/a
3	chr9:86538824-86538874	Hepatocyte	liver:	n/a
4	chr9:86538824-86538874	BE2_C	brain:	n/a
5	chr9:86538824-86538874	K562	blood:	n/a
6	chr9:86538824-86538874	HCT-116	colon:	n/a
7	chr9:86538824-86538874	NB4	blood:	n/a
8	chr9:86538824-86538874	U87	brain:	n/a
9	chr9:86538824-86538874	GM19239	blood:	n/a
10	chr9:86538824-86538874	HCF	heart:	n/a
11	chr9:86538824-86538874	NHBE	bronchial:	n/a
12	chr9:86538824-86538874	AG09309	skin:	n/a
13	chr9:86538824-86538874	GM06990	blood:	n/a
14	chr9:86538824-86538874	NT2-D1	testis:	n/a
15	chr9:86538824-86538874	GM12892	blood:	n/a
16	chr9:86538824-86538874	AG10803	skin:	n/a
17	chr9:86538824-86538874	HEK293	kidney:	embryo
18	chr9:86538824-86538874	AG09319	gingival:	n/a
19	chr9:86538824-86538874	ovcar-3	ovarian:	n/a
20	chr9:86538824-86538874	ProgFib	skin:	n/a
21	chr9:86538824-86538874	HIPEpiC	eye:	n/a
22	chr9:86538824-86538874	BJ	skin:	n/a
23	chr9:86538824-86538874	MCF-7	breast:	n/a
24	chr9:86538824-86538874	NH-A	brain:	n/a
25	chr9:86538824-86538874	H1-hESC	embryonic stem cell:	embryo
26	chr9:86538824-86538874	GM12878	blood:	n/a
27	chr9:86538824-86538874	PrEC	prostate:	n/a
28	chr9:86538824-86538874	HPAEpiC	pulmonary alveolar:	n/a
29	chr9:86538824-86538874	HRE	kidney:	n/a
30	chr9:86538824-86538874	HUVEC	blood vessel:	n/a
31	chr9:86538824-86538874	PFSK-1	brain:	n/a
32	chr9:86538824-86538874	NHDF-neo	bronchial:	n/a
33	chr9:86538824-86538874	HRPEpiC	eye:	n/a
34	chr9:86538824-86538874	SK-N-SH	brain:	n/a
35	chr9:86538824-86538874	HAEpiC	amniotic membrane:	n/a
36	chr9:86538824-86538874	HRCEpiC	kidney:	n/a
37	chr9:86538824-86538874	HepG2	liver:	n/a
38	chr9:86538824-86538874	Hela-S3	cervix:	n/a
39	chr9:86538824-86538874	SK-N-SH_RA	brain:	n/a
40	chr9:86538824-86538874	HL-60	blood:	n/a
41	chr9:86538824-86538874	A549	lung:	n/a
42	chr9:86538824-86538874	AoSMC	blood vessel:	n/a
43	chr9:86538824-86538874	RPTEC	kidney:	n/a
44	chr9:86538824-86538874	HEEpiC	esophagus:	n/a
45	chr9:86538824-86538874	PANC-1	pancreas:	n/a
46	chr9:86538824-86538874	LNCaP	prostate:	n/a
47	chr9:86538824-86538874	T-47D	breast:	n/a
48	chr9:86538824-86538874	SK-N-MC	brain:	n/a
49	chr9:86538824-86538874	IMR90	lung:	fetal
50	chr9:86538824-86538874	HNPCEpiC	eye:	n/a

No data

Variant related genes	Relation type
KIF27	CpG island

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10868067	0.93[EUR][1000 genomes]
rs11140269	0.85[EUR][1000 genomes]
rs11140270	0.85[EUR][1000 genomes]
rs11140271	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140274	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140275	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140280	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140288	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140290	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11140292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140294	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140308	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11140309	1.00[EUR][1000 genomes]
rs11140310	1.00[EUR][1000 genomes]
rs11140312	1.00[EUR][1000 genomes]
rs11140313	1.00[EUR][1000 genomes]
rs11140314	1.00[EUR][1000 genomes]
rs11140316	1.00[EUR][1000 genomes]
rs11140318	1.00[EUR][1000 genomes]
rs11140321	1.00[EUR][1000 genomes]
rs11140322	1.00[EUR][1000 genomes]
rs11140337	1.00[EUR][1000 genomes]
rs11140338	1.00[EUR][1000 genomes]
rs11531847	1.00[EUR][1000 genomes]
rs11533022	1.00[EUR][1000 genomes]
rs11533047	0.93[EUR][1000 genomes]
rs11535577	1.00[EUR][1000 genomes]
rs11559387	0.85[EUR][1000 genomes]
rs12056961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235653	1.00[EUR][1000 genomes]
rs12237056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12237297	1.00[EUR][1000 genomes]
rs2017558	1.00[EUR][1000 genomes]
rs3750407	1.00[EUR][1000 genomes]
rs59409125	1.00[EUR][1000 genomes]
rs60989495	0.86[EUR][1000 genomes]
rs73471357	1.00[EUR][1000 genomes]
rs9776332	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv8541	chr9:86469723-86593758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv438108	chr9:86488586-86542206	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
7	nsv831644	chr9:86534310-86704395	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86536600-86571000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:86537000-86543800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:86537000-86553600	Weak transcription	Fetal Intestine Small	intestine
4	chr9:86537000-86553600	Weak transcription	Thymus	Thymus
5	chr9:86537200-86545600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:86537800-86542600	Weak transcription	Primary monocytes fromperipheralblood	blood

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