Variant report

Variant	rs11140270
Chromosome Location	chr9:86458806-86458807
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11140179	0.85[EUR][1000 genomes]
rs11140182	0.85[EUR][1000 genomes]
rs11140183	0.85[EUR][1000 genomes]
rs11140191	0.85[EUR][1000 genomes]
rs11140192	0.85[EUR][1000 genomes]
rs11140199	0.85[EUR][1000 genomes]
rs11140203	0.85[EUR][1000 genomes]
rs11140215	0.85[EUR][1000 genomes]
rs11140217	0.85[EUR][1000 genomes]
rs11140219	0.85[EUR][1000 genomes]
rs11140225	0.85[EUR][1000 genomes]
rs11140228	0.85[EUR][1000 genomes]
rs11140229	0.85[EUR][1000 genomes]
rs11140235	0.85[EUR][1000 genomes]
rs11140248	0.85[EUR][1000 genomes]
rs11140250	0.85[EUR][1000 genomes]
rs11140252	0.85[EUR][1000 genomes]
rs11140254	0.85[EUR][1000 genomes]
rs11140257	0.85[EUR][1000 genomes]
rs11140258	0.85[EUR][1000 genomes]
rs11140266	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140269	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140271	0.85[EUR][1000 genomes]
rs11140280	0.85[EUR][1000 genomes]
rs11140288	0.85[EUR][1000 genomes]
rs11140292	0.85[EUR][1000 genomes]
rs11140294	0.85[EUR][1000 genomes]
rs11140296	0.85[EUR][1000 genomes]
rs11140308	0.85[EUR][1000 genomes]
rs11140309	0.85[EUR][1000 genomes]
rs11140310	0.85[EUR][1000 genomes]
rs11140312	0.85[EUR][1000 genomes]
rs11140313	0.85[EUR][1000 genomes]
rs11140314	0.85[EUR][1000 genomes]
rs11140316	0.85[EUR][1000 genomes]
rs11140318	0.85[EUR][1000 genomes]
rs11140321	0.85[EUR][1000 genomes]
rs11140322	0.85[EUR][1000 genomes]
rs11140337	0.85[EUR][1000 genomes]
rs11140338	0.85[EUR][1000 genomes]
rs11531847	0.85[EUR][1000 genomes]
rs11533022	0.85[EUR][1000 genomes]
rs11535577	0.85[EUR][1000 genomes]
rs11559387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11560627	0.85[EUR][1000 genomes]
rs12056961	0.85[EUR][1000 genomes]
rs12235151	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235653	0.85[EUR][1000 genomes]
rs12236455	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236743	0.85[EUR][1000 genomes]
rs12237056	0.85[EUR][1000 genomes]
rs12237262	0.85[EUR][1000 genomes]
rs12237297	0.85[EUR][1000 genomes]
rs12237555	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12238365	0.85[EUR][1000 genomes]
rs12238575	0.85[EUR][1000 genomes]
rs2017558	0.85[EUR][1000 genomes]
rs2282221	0.85[EUR][1000 genomes]
rs2282222	0.85[EUR][1000 genomes]
rs28627139	0.85[EUR][1000 genomes]
rs28655802	0.87[ASN][1000 genomes]
rs3750407	0.85[EUR][1000 genomes]
rs3763626	0.85[EUR][1000 genomes]
rs59409125	0.85[EUR][1000 genomes]
rs73471357	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469859	chr9:86398152-86587957	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv482641	chr9:86398152-86587957	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv2758192	chr9:86414024-86603602	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2759701	chr9:86414024-86603602	Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv982312	chr9:86424154-86490046	Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv6590	chr9:86435603-86480442	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv8540	chr9:86458587-86470369	Strong transcription ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86447800-86461200	Weak transcription	Fetal Brain Female	brain
2	chr9:86447800-86470800	Weak transcription	Brain Germinal Matrix	brain
3	chr9:86452000-86467800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:86452200-86464000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:86453400-86461200	Weak transcription	Fetal Intestine Large	intestine
6	chr9:86454400-86461200	Weak transcription	Primary T cells from cord blood	blood
7	chr9:86455400-86461200	Weak transcription	Dnd41	blood
8	chr9:86455400-86461400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:86456000-86461000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:86456000-86463600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:86456200-86466200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:86456600-86472600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:86456800-86463200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:86457000-86464000	Weak transcription	Left Ventricle	heart
15	chr9:86457400-86461000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:86457400-86461200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:86457400-86461200	Weak transcription	Brain Anterior Caudate	brain
18	chr9:86457400-86461200	Weak transcription	Fetal Lung	lung
19	chr9:86457400-86461200	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:86457400-86461200	Weak transcription	Lung	lung
21	chr9:86457400-86461400	Weak transcription	Fetal Thymus	thymus
22	chr9:86457400-86461600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:86457400-86461800	Weak transcription	Fetal Brain Male	brain
24	chr9:86457400-86464200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr9:86457400-86468400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr9:86457400-86469000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:86457600-86464000	Weak transcription	Pancreas	Pancrea
28	chr9:86458000-86463600	Weak transcription	Esophagus	oesophagus
29	chr9:86458600-86459400	Strong transcription	Fetal Intestine Small	intestine
30	chr9:86458600-86462800	Strong transcription	Fetal Stomach	stomach
31	chr9:86458800-86459200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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