Variant report

Variant	rs11140219
Chromosome Location	chr9:86316904-86316905
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86313399..86317163-chr9:86318289..86320003,3	K562	blood:
2	chr9:86236927..86238886-chr9:86316132..86318961,2	MCF-7	breast:
3	chr9:86282376..86284181-chr9:86315940..86318221,2	K562	blood:

Variant related genes	Relation type
ENSG00000148057	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11140178	0.85[EUR][1000 genomes]
rs11140179	1.00[EUR][1000 genomes]
rs11140182	1.00[EUR][1000 genomes]
rs11140183	1.00[EUR][1000 genomes]
rs11140191	1.00[EUR][1000 genomes]
rs11140192	1.00[EUR][1000 genomes]
rs11140197	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11140199	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11140203	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11140215	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11140217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140225	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140228	1.00[EUR][1000 genomes]
rs11140229	1.00[EUR][1000 genomes]
rs11140230	0.92[EUR][1000 genomes]
rs11140235	1.00[EUR][1000 genomes]
rs11140248	1.00[EUR][1000 genomes]
rs11140250	1.00[EUR][1000 genomes]
rs11140252	1.00[EUR][1000 genomes]
rs11140254	1.00[EUR][1000 genomes]
rs11140257	1.00[EUR][1000 genomes]
rs11140258	1.00[EUR][1000 genomes]
rs11140266	0.92[EUR][1000 genomes]
rs11140269	0.85[EUR][1000 genomes]
rs11140270	0.85[EUR][1000 genomes]
rs11559387	0.85[EUR][1000 genomes]
rs11560627	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12235151	0.92[EUR][1000 genomes]
rs12236455	0.92[EUR][1000 genomes]
rs12236743	1.00[EUR][1000 genomes]
rs12237262	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12237555	1.00[EUR][1000 genomes]
rs12238365	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12238575	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2282221	1.00[EUR][1000 genomes]
rs2282222	1.00[EUR][1000 genomes]
rs28627139	1.00[EUR][1000 genomes]
rs28655802	0.86[EUR][1000 genomes]
rs3763626	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86289000-86321800	Weak transcription	Esophagus	oesophagus
2	chr9:86293600-86317000	Weak transcription	NHLF	lung
3	chr9:86294000-86321800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:86294200-86320000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:86296000-86320800	Weak transcription	Fetal Brain Female	brain
6	chr9:86297000-86320000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:86297600-86319800	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:86297600-86321200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:86298000-86320400	Weak transcription	Fetal Intestine Large	intestine
10	chr9:86298200-86317000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:86298200-86317600	Weak transcription	Dnd41	blood
12	chr9:86298600-86320400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:86298800-86320800	Weak transcription	Fetal Thymus	thymus
14	chr9:86299600-86319400	Weak transcription	Fetal Stomach	stomach
15	chr9:86299600-86320000	Weak transcription	Fetal Intestine Small	intestine
16	chr9:86300400-86320400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:86300600-86320400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:86301000-86317000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:86301000-86320800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr9:86304400-86320800	Weak transcription	Brain Anterior Caudate	brain
21	chr9:86307600-86320400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr9:86310200-86317200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr9:86310400-86320600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr9:86311200-86320800	Weak transcription	Fetal Lung	lung
25	chr9:86311600-86320000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr9:86311800-86317800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr9:86311800-86321000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:86312000-86319400	Weak transcription	Primary B cells from cord blood	blood
29	chr9:86312800-86320800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr9:86313000-86317200	Enhancers	Primary B cells from peripheral blood	blood
31	chr9:86313000-86319400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr9:86313200-86318000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr9:86313200-86320800	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr9:86313400-86319800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:86313600-86321000	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr9:86313800-86317000	Enhancers	HUVEC	blood vessel
37	chr9:86313800-86319400	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr9:86314200-86317000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr9:86314200-86317200	Enhancers	Liver	Liver
40	chr9:86314400-86319800	Enhancers	Primary T cells from cord blood	blood
41	chr9:86314400-86320800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr9:86314600-86319400	Weak transcription	Spleen	Spleen
43	chr9:86314600-86320200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:86314600-86321400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr9:86314600-86321400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr9:86314600-86321400	Weak transcription	Gastric	stomach
47	chr9:86314600-86321800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:86315000-86320000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr9:86315000-86320400	Weak transcription	Fetal Heart	heart
50	chr9:86315000-86320600	Weak transcription	Stomach Mucosa	stomach

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