Variant report

Variant	rs3763626
Chromosome Location	chr9:86301240-86301241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:86301193-86301289	Gliobla	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86298986..86303456-chr9:86320609..86324425,4	MCF-7	breast:
2	chr9:86300840..86303166-chr9:86321097..86323645,3	K562	blood:

Variant related genes	Relation type
UBQLN1	TF binding region
ENSG00000254473	Chromatin interaction
ENSG00000135018	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11140178	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11140179	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11140182	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11140183	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11140191	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11140192	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11140197	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11140199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140203	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140215	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11140217	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11140219	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11140225	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11140228	1.00[EUR][1000 genomes]
rs11140229	1.00[EUR][1000 genomes]
rs11140230	0.92[EUR][1000 genomes]
rs11140235	1.00[EUR][1000 genomes]
rs11140248	1.00[EUR][1000 genomes]
rs11140250	1.00[EUR][1000 genomes]
rs11140252	1.00[EUR][1000 genomes]
rs11140254	1.00[EUR][1000 genomes]
rs11140257	1.00[EUR][1000 genomes]
rs11140258	1.00[EUR][1000 genomes]
rs11140266	0.92[EUR][1000 genomes]
rs11140269	0.85[EUR][1000 genomes]
rs11140270	0.85[EUR][1000 genomes]
rs11559387	0.85[EUR][1000 genomes]
rs11560627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235151	0.92[EUR][1000 genomes]
rs12236455	0.92[EUR][1000 genomes]
rs12236743	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12237262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12237555	1.00[EUR][1000 genomes]
rs12238365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238575	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2282221	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2282222	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28627139	1.00[EUR][1000 genomes]
rs28655802	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86273800-86304000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:86280400-86307400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:86289000-86304200	Weak transcription	Ovary	ovary
4	chr9:86289000-86308200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:86289000-86321800	Weak transcription	Esophagus	oesophagus
6	chr9:86291400-86314400	Weak transcription	Fetal Heart	heart
7	chr9:86292800-86308600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:86293600-86301400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr9:86293600-86304200	Weak transcription	Brain Hippocampus Middle	brain
10	chr9:86293600-86317000	Weak transcription	NHLF	lung
11	chr9:86294000-86321800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:86294200-86305800	Weak transcription	Spleen	Spleen
13	chr9:86294200-86314200	Weak transcription	Gastric	stomach
14	chr9:86294200-86315600	Weak transcription	Right Ventricle	heart
15	chr9:86294200-86320000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:86295000-86301400	Weak transcription	Fetal Kidney	kidney
17	chr9:86295000-86308800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:86295000-86313600	Weak transcription	Lung	lung
19	chr9:86296000-86304000	Weak transcription	NHDF-Ad	bronchial
20	chr9:86296000-86320800	Weak transcription	Fetal Brain Female	brain
21	chr9:86296200-86316800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:86296400-86303000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:86296400-86304200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr9:86296600-86303800	Weak transcription	Brain Substantia Nigra	brain
25	chr9:86296800-86301400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:86296800-86302200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:86296800-86303200	Weak transcription	Brain Germinal Matrix	brain
28	chr9:86296800-86306400	Weak transcription	Colon Smooth Muscle	Colon
29	chr9:86296800-86314200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr9:86297000-86301400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr9:86297000-86304000	Weak transcription	Brain Angular Gyrus	brain
32	chr9:86297000-86304000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr9:86297000-86315600	Weak transcription	HMEC	breast
34	chr9:86297000-86315600	Weak transcription	HSMM	muscle
35	chr9:86297000-86320000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr9:86297200-86305400	Weak transcription	Psoas Muscle	Psoas
37	chr9:86297400-86301600	Weak transcription	Primary T cells from cord blood	blood
38	chr9:86297600-86302600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr9:86297600-86305400	Weak transcription	Left Ventricle	heart
40	chr9:86297600-86305400	Weak transcription	Small Intestine	intestine
41	chr9:86297600-86310800	Weak transcription	Fetal Lung	lung
42	chr9:86297600-86314400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr9:86297600-86319800	Weak transcription	Fetal Muscle Leg	muscle
44	chr9:86297600-86321200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:86297800-86303800	Weak transcription	Adipose Nuclei	Adipose
46	chr9:86297800-86305000	Weak transcription	Osteobl	bone
47	chr9:86297800-86311600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr9:86297800-86314800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr9:86297800-86315800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:86298000-86301600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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