Variant report

Variant	rs11140179
Chromosome Location	chr9:86238774-86238775
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:86235893..86237501-chr9:86238448..86240518,2	MCF-7	breast:
2	chr9:86237285..86238795-chr9:86535469..86537545,2	K562	blood:
3	chr9:86236918..86239524-chr9:86322198..86323756,2	K562	blood:
4	chr9:86237271..86239294-chr9:86534482..86537409,3	MCF-7	breast:
5	chr6:151712214..151713783-chr9:86237532..86239422,2	MCF-7	breast:
6	chr9:86237033..86239481-chr9:86571525..86573399,2	MCF-7	breast:
7	chr9:86236280..86241962-chr9:86320992..86325340,9	MCF-7	breast:
8	chr9:86238599..86242233-chr9:86242446..86245459,4	K562	blood:
9	chr9:86153786..86156686-chr9:86238312..86239923,2	MCF-7	breast:
10	chr9:86236616..86242493-chr9:86533666..86537484,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254473	Chromatin interaction
ENSG00000135018	Chromatin interaction
ENSG00000165118	Chromatin interaction
ENSG00000165115	Chromatin interaction
ENSG00000181472	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11140175	0.90[ASN][1000 genomes]
rs11140178	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140182	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140183	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140191	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140197	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11140199	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11140203	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11140215	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11140217	1.00[EUR][1000 genomes]
rs11140219	1.00[EUR][1000 genomes]
rs11140225	1.00[EUR][1000 genomes]
rs11140228	1.00[EUR][1000 genomes]
rs11140229	1.00[EUR][1000 genomes]
rs11140230	0.92[EUR][1000 genomes]
rs11140235	1.00[EUR][1000 genomes]
rs11140248	1.00[EUR][1000 genomes]
rs11140250	1.00[EUR][1000 genomes]
rs11140252	1.00[EUR][1000 genomes]
rs11140254	1.00[EUR][1000 genomes]
rs11140257	1.00[EUR][1000 genomes]
rs11140258	1.00[EUR][1000 genomes]
rs11140266	0.92[EUR][1000 genomes]
rs11140269	0.85[EUR][1000 genomes]
rs11140270	0.85[EUR][1000 genomes]
rs11559387	0.85[EUR][1000 genomes]
rs11560627	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12235151	0.92[EUR][1000 genomes]
rs12236455	0.92[EUR][1000 genomes]
rs12236743	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12237262	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12237555	1.00[EUR][1000 genomes]
rs12238365	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12238575	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2282221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627139	1.00[EUR][1000 genomes]
rs28655802	0.86[EUR][1000 genomes]
rs3763626	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv516587	chr9:86226119-86255765	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	esv3410885	chr9:86236957-86239705	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86237200-86238800	Active TSS	GM12878-XiMat	blood
2	chr9:86237200-86239000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr9:86237200-86239200	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr9:86237400-86238800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr9:86237400-86238800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:86237400-86238800	Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr9:86237400-86238800	Active TSS	Primary T killer memory cells from peripheral blood	blood
8	chr9:86237400-86238800	Active TSS	Aorta	Aorta
9	chr9:86237400-86238800	Active TSS	Brain Angular Gyrus	brain
10	chr9:86237400-86238800	Active TSS	Brain Germinal Matrix	brain
11	chr9:86237400-86238800	Active TSS	Fetal Kidney	kidney
12	chr9:86237400-86238800	Active TSS	Rectal Smooth Muscle	rectum
13	chr9:86237400-86238800	Active TSS	Sigmoid Colon	Sigmoid Colon
14	chr9:86237400-86238800	Active TSS	Small Intestine	intestine
15	chr9:86237400-86239000	Active TSS	H1 Cell Line	embryonic stem cell
16	chr9:86237400-86239000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:86237400-86239000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr9:86237400-86239000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:86237400-86239000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:86237400-86239000	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr9:86237400-86239000	Active TSS	Fetal Muscle Trunk	muscle
22	chr9:86237400-86239000	Active TSS	A549	lung
23	chr9:86237400-86239200	Active TSS	Stomach Smooth Muscle	stomach
24	chr9:86237400-86239400	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr9:86237600-86238800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:86237600-86238800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:86237600-86238800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:86237600-86238800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:86237600-86238800	Active TSS	Primary T cells from cord blood	blood
30	chr9:86237600-86238800	Active TSS	Brain Anterior Caudate	brain
31	chr9:86237600-86238800	Active TSS	Duodenum Mucosa	Duodenum
32	chr9:86237600-86238800	Active TSS	Esophagus	oesophagus
33	chr9:86237600-86238800	Active TSS	Fetal Brain Female	brain
34	chr9:86237600-86238800	Active TSS	Left Ventricle	heart
35	chr9:86237600-86238800	Active TSS	Lung	lung
36	chr9:86237600-86238800	Active TSS	Pancreas	Pancrea
37	chr9:86237600-86238800	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr9:86237600-86238800	Active TSS	Right Atrium	heart
39	chr9:86237600-86238800	Active TSS	Right Ventricle	heart
40	chr9:86237600-86238800	Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr9:86237600-86239000	Active TSS	NHLF	lung
42	chr9:86237600-86239200	Active TSS	Colonic Mucosa	Colon
43	chr9:86237600-86239200	Active TSS	Thymus	Thymus
44	chr9:86237800-86238800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr9:86237800-86238800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:86237800-86238800	Active TSS	Fetal Intestine Small	intestine
47	chr9:86237800-86238800	Active TSS	Fetal Thymus	thymus
48	chr9:86237800-86238800	Active TSS	Gastric	stomach
49	chr9:86237800-86238800	Active TSS	Placenta Amnion	Placenta Amnion
50	chr9:86237800-86239400	Active TSS	NHEK	skin

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