Variant report

Variant	rs11140178
Chromosome Location	chr9:86231758-86231759
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86230487..86233014-chr9:86237019..86239739,2	MCF-7	breast:
2	chr9:86231309..86235233-chr9:86236386..86239078,4	MCF-7	breast:
3	chr9:86229963..86232786-chr9:86243072..86244741,2	K562	blood:
4	chr9:86230729..86232939-chr9:86244046..86245933,2	K562	blood:

Variant related genes	Relation type
ENSG00000148057	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11140175	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11140179	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140182	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140183	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140191	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140192	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140197	0.90[ASN][1000 genomes]
rs11140199	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11140203	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11140215	0.85[EUR][1000 genomes]
rs11140217	0.85[EUR][1000 genomes]
rs11140219	0.85[EUR][1000 genomes]
rs11140225	0.85[EUR][1000 genomes]
rs11140228	0.85[EUR][1000 genomes]
rs11140229	0.85[EUR][1000 genomes]
rs11140235	0.85[EUR][1000 genomes]
rs11140248	0.85[EUR][1000 genomes]
rs11140250	0.85[EUR][1000 genomes]
rs11140252	0.85[EUR][1000 genomes]
rs11140254	0.85[EUR][1000 genomes]
rs11140257	0.85[EUR][1000 genomes]
rs11140258	0.85[EUR][1000 genomes]
rs11560627	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12236743	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12237262	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12237555	0.85[EUR][1000 genomes]
rs12238365	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12238575	0.85[EUR][1000 genomes]
rs2282221	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2282222	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28627139	0.85[EUR][1000 genomes]
rs3763626	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6559738	1.00[AMR][1000 genomes]
rs7043270	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv516587	chr9:86226119-86255765	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86216200-86237400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:86231600-86233000	Enhancers	Liver	Liver

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