Variant report

Variant	rs11142463
Chromosome Location	chr9:73086932-73086933
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:73081016..73082623-chr9:73085751..73087573,2	K562	blood:
2	chr9:73086029..73087560-chr9:73098200..73100795,2	K562	blood:
3	chr9:73034114..73036862-chr9:73085888..73088465,2	K562	blood:
4	chr9:73026142..73029023-chr9:73084919..73087597,3	MCF-7	breast:
5	chr9:73085757..73088696-chr9:73091890..73094537,4	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12341550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35390807	1.00[AMR][1000 genomes]
rs73446761	1.00[AMR][1000 genomes]
rs73446770	1.00[AMR][1000 genomes]
rs73446796	1.00[AMR][1000 genomes]
rs73448908	1.00[AMR][1000 genomes]
rs73454775	1.00[AMR][1000 genomes]
rs73456672	1.00[AMR][1000 genomes]
rs73647103	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73077600-73087800	Weak transcription	Gastric	stomach
2	chr9:73082600-73087600	Weak transcription	Esophagus	oesophagus
3	chr9:73082600-73091600	Weak transcription	HSMMtube	muscle
4	chr9:73082600-73092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:73082800-73087200	Weak transcription	HSMM	muscle
6	chr9:73082800-73087200	Weak transcription	Osteobl	bone
7	chr9:73083200-73087200	Weak transcription	Right Ventricle	heart
8	chr9:73083600-73090800	Enhancers	Liver	Liver
9	chr9:73085000-73093800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:73085200-73088000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:73085200-73088000	Enhancers	Brain Hippocampus Middle	brain
12	chr9:73085400-73087200	Weak transcription	Colonic Mucosa	Colon
13	chr9:73085400-73090800	Enhancers	Stomach Mucosa	stomach
14	chr9:73085800-73087000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:73085800-73087600	Weak transcription	Lung	lung
16	chr9:73085800-73093000	Weak transcription	Aorta	Aorta
17	chr9:73086000-73087000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr9:73086000-73087200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:73086000-73087200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:73086000-73087200	Weak transcription	Right Atrium	heart
21	chr9:73086000-73087400	Weak transcription	Brain Angular Gyrus	brain
22	chr9:73086000-73087600	Weak transcription	Psoas Muscle	Psoas
23	chr9:73086000-73090200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:73086000-73091600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr9:73086000-73093000	Weak transcription	Ovary	ovary
26	chr9:73086000-73093800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr9:73086000-73094200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr9:73086200-73087000	Weak transcription	Adipose Nuclei	Adipose
29	chr9:73086200-73087000	Enhancers	HepG2	liver
30	chr9:73086200-73087200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:73086200-73087200	Weak transcription	Brain Anterior Caudate	brain
32	chr9:73086200-73087200	Weak transcription	Small Intestine	intestine
33	chr9:73086200-73087400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:73086200-73087400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr9:73086200-73087400	Weak transcription	Brain Substantia Nigra	brain
36	chr9:73086200-73087600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr9:73086200-73088000	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr9:73086200-73089200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:73086200-73089200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:73086200-73089600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr9:73086200-73090200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:73086200-73092800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr9:73086200-73094000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr9:73086400-73087400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:73086400-73087600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr9:73086400-73089400	Weak transcription	Colon Smooth Muscle	Colon
47	chr9:73086400-73089400	Weak transcription	HUVEC	blood vessel
48	chr9:73086400-73094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr9:73086600-73097400	Enhancers	Left Ventricle	heart
50	chr9:73086800-73087800	Enhancers	Muscle Satellite Cultured Cells	--

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