Variant report

Variant	rs73446796
Chromosome Location	chr9:72901567-72901568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72873371..72875621-chr9:72900313..72901949,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268364	Chromatin interaction
ENSG00000198887	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11142463	1.00[AMR][1000 genomes]
rs12341550	1.00[AMR][1000 genomes]
rs58121128	1.00[AMR][1000 genomes]
rs73446761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73446770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448656	1.00[AMR][1000 genomes]
rs73448659	1.00[AMR][1000 genomes]
rs73448667	1.00[AMR][1000 genomes]
rs73448674	1.00[AMR][1000 genomes]
rs73448682	1.00[AMR][1000 genomes]
rs73448908	1.00[AMR][1000 genomes]
rs73451417	1.00[AMR][1000 genomes]
rs73451448	1.00[AMR][1000 genomes]
rs73451458	1.00[AMR][1000 genomes]
rs73452704	1.00[AMR][1000 genomes]
rs73452711	1.00[AMR][1000 genomes]
rs73452717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73452734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73454775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456672	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72875400-72906200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:72876000-72906200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:72876400-72916800	Weak transcription	Colonic Mucosa	Colon
5	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
6	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
8	chr9:72877000-72904800	Weak transcription	Brain Germinal Matrix	brain
9	chr9:72877000-72939800	Weak transcription	Gastric	stomach
10	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:72877600-72909600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:72878600-72902400	Weak transcription	Brain Angular Gyrus	brain
14	chr9:72878600-72937600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr9:72880000-72939400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:72880200-72906200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:72881000-72905000	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:72881000-72905000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:72882800-72906000	Weak transcription	K562	blood
20	chr9:72885400-72916800	Weak transcription	Esophagus	oesophagus
21	chr9:72887600-72906200	Weak transcription	Psoas Muscle	Psoas
22	chr9:72887600-72916800	Weak transcription	Aorta	Aorta
23	chr9:72889400-72904200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:72890000-72905800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:72890400-72904800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:72891000-72905000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:72891000-72908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr9:72891000-72911000	Strong transcription	HSMM	muscle
29	chr9:72891000-72923400	Strong transcription	Dnd41	blood
30	chr9:72891200-72907400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr9:72891600-72902400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr9:72891600-72905200	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:72892800-72907600	Strong transcription	NH-A	brain
35	chr9:72893000-72902800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr9:72893000-72903000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr9:72893000-72904000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:72893000-72904000	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr9:72893000-72906600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:72893200-72903200	Strong transcription	Adipose Nuclei	Adipose
41	chr9:72893400-72902400	Strong transcription	HUVEC	blood vessel
42	chr9:72893400-72902600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr9:72893400-72902800	Strong transcription	Fetal Thymus	thymus
44	chr9:72893400-72904200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:72893400-72906000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr9:72893400-72907400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr9:72893400-72908000	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr9:72893800-72901800	Strong transcription	Osteobl	bone
49	chr9:72893800-72902600	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr9:72894200-72902800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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