Variant report

Variant	rs73452704
Chromosome Location	chr9:72821236-72821237
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72805117..72807381-chr9:72819423..72821508,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs58121128	1.00[AMR][1000 genomes]
rs58305401	1.00[AMR][1000 genomes]
rs73446761	1.00[AMR][1000 genomes]
rs73446770	1.00[AMR][1000 genomes]
rs73446796	1.00[AMR][1000 genomes]
rs73448656	1.00[AMR][1000 genomes]
rs73448659	1.00[AMR][1000 genomes]
rs73448667	1.00[AMR][1000 genomes]
rs73448674	1.00[AMR][1000 genomes]
rs73448682	1.00[AMR][1000 genomes]
rs73448908	1.00[AMR][1000 genomes]
rs73451417	1.00[AMR][1000 genomes]
rs73451448	1.00[AMR][1000 genomes]
rs73451458	1.00[AMR][1000 genomes]
rs73452711	1.00[AMR][1000 genomes]
rs73452717	1.00[AMR][1000 genomes]
rs73452734	1.00[AMR][1000 genomes]
rs73454775	1.00[AMR][1000 genomes]
rs73456672	1.00[AMR][1000 genomes]
rs73458462	1.00[AMR][1000 genomes]
rs73458478	1.00[AMR][1000 genomes]
rs73458721	1.00[AMR][1000 genomes]
rs73458732	1.00[AMR][1000 genomes]
rs73460504	1.00[AMR][1000 genomes]
rs73460506	1.00[AMR][1000 genomes]
rs73460510	1.00[AMR][1000 genomes]
rs73460516	1.00[AMR][1000 genomes]
rs73460525	1.00[AMR][1000 genomes]
rs73650513	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72793000-72842600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:72802000-72827000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:72809600-72837800	Weak transcription	NH-A	brain
4	chr9:72810800-72827800	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:72820000-72821400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:72820000-72821600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:72820400-72821400	Strong transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:72820400-72821400	Strong transcription	Stomach Smooth Muscle	stomach
9	chr9:72820600-72821400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:72820600-72826800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr9:72820800-72821400	Enhancers	NHEK	skin
12	chr9:72820800-72827200	Weak transcription	Left Ventricle	heart
13	chr9:72820800-72827200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr9:72820800-72835400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:72821000-72823200	Weak transcription	Liver	Liver
16	chr9:72821000-72827200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:72821000-72827400	Weak transcription	HSMM	muscle
18	chr9:72821200-72825800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:72821200-72827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:72821200-72827400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:72821200-72828200	Weak transcription	HSMMtube	muscle
22	chr9:72821200-72844800	Weak transcription	HMEC	breast

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