Variant report

Variant	rs73460506
Chromosome Location	chr9:72673673-72673674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs58121128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58305401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60109285	1.00[AMR][1000 genomes]
rs7025350	1.00[AMR][1000 genomes]
rs73446761	1.00[AMR][1000 genomes]
rs73448656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448682	1.00[AMR][1000 genomes]
rs73451417	1.00[AMR][1000 genomes]
rs73451448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73452704	1.00[AMR][1000 genomes]
rs73452711	1.00[AMR][1000 genomes]
rs73452717	1.00[AMR][1000 genomes]
rs73452734	1.00[AMR][1000 genomes]
rs73458462	1.00[AMR][1000 genomes]
rs73458478	1.00[AMR][1000 genomes]
rs73458721	1.00[AMR][1000 genomes]
rs73458732	1.00[AMR][1000 genomes]
rs73460504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73647292	1.00[AMR][1000 genomes]
rs73647298	1.00[AMR][1000 genomes]
rs73650513	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72667600-72688400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:72668800-72675800	Enhancers	Rectal Smooth Muscle	rectum
3	chr9:72668800-72676600	Weak transcription	Gastric	stomach
4	chr9:72668800-72681400	Weak transcription	Esophagus	oesophagus
5	chr9:72669200-72675000	Weak transcription	NHDF-Ad	bronchial
6	chr9:72669200-72682600	Weak transcription	Osteobl	bone
7	chr9:72670000-72675000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:72670000-72688400	Weak transcription	NH-A	brain
9	chr9:72670200-72675000	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr9:72670200-72675200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:72670400-72674800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:72670600-72674600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:72670600-72674600	Weak transcription	Psoas Muscle	Psoas
14	chr9:72670600-72676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:72671000-72675600	Enhancers	Stomach Smooth Muscle	stomach
16	chr9:72671200-72676000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:72671600-72675600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:72672000-72674600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:72672000-72675600	Weak transcription	HSMM	muscle
20	chr9:72672000-72676000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:72672200-72675200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:72672400-72674000	Weak transcription	Small Intestine	intestine
23	chr9:72672400-72674000	Weak transcription	HSMMtube	muscle
24	chr9:72672400-72674400	Weak transcription	HMEC	breast
25	chr9:72672400-72674600	Weak transcription	NHEK	skin
26	chr9:72672400-72675800	Weak transcription	Spleen	Spleen
27	chr9:72672400-72680200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:72672400-72681400	Weak transcription	Ovary	ovary
29	chr9:72672600-72676600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:72673000-72675800	Enhancers	Colon Smooth Muscle	Colon
31	chr9:72673200-72674200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:72673400-72674000	Enhancers	Adipose Nuclei	Adipose
33	chr9:72673400-72674000	Enhancers	Fetal Stomach	stomach
34	chr9:72673400-72674200	Enhancers	Fetal Lung	lung
35	chr9:72673400-72674200	Enhancers	Fetal Muscle Leg	muscle
36	chr9:72673400-72674200	Enhancers	Right Atrium	heart
37	chr9:72673400-72674800	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr9:72673600-72674000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links