Variant report

rSNPs within LD-proxies of this variant (count:25)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72637600-72649200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:72646400-72650400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:72646600-72650400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:72646800-72649200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:72646800-72651000	Weak transcription	NHDF-Ad	bronchial
6	chr9:72646800-72651600	Weak transcription	HMEC	breast
7	chr9:72646800-72653000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:72646800-72653000	Weak transcription	HUVEC	blood vessel
9	chr9:72647400-72657200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:72648000-72653000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:72648200-72650200	Enhancers	HSMMtube	muscle
12	chr9:72648400-72650200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:72648600-72649800	Enhancers	Esophagus	oesophagus
14	chr9:72648600-72649800	Enhancers	NH-A	brain
15	chr9:72648600-72650200	Enhancers	HSMM	muscle
16	chr9:72648800-72650000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:72649000-72649200	Enhancers	Thymus	Thymus
18	chr9:72649000-72649400	Enhancers	NHEK	skin
19	chr9:72649000-72650000	Enhancers	Osteobl	bone
20	chr9:72649000-72650200	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search: