Variant report

Variant	rs73458478
Chromosome Location	chr9:72659698-72659699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72655440..72657664-chr9:72659271..72661535,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs58121128	1.00[AMR][1000 genomes]
rs58305401	1.00[AMR][1000 genomes]
rs60109285	1.00[AMR][1000 genomes]
rs7025350	1.00[AMR][1000 genomes]
rs73448656	1.00[AMR][1000 genomes]
rs73448659	1.00[AMR][1000 genomes]
rs73448667	1.00[AMR][1000 genomes]
rs73448674	1.00[AMR][1000 genomes]
rs73448682	1.00[AMR][1000 genomes]
rs73451417	1.00[AMR][1000 genomes]
rs73451448	1.00[AMR][1000 genomes]
rs73451458	1.00[AMR][1000 genomes]
rs73452704	1.00[AMR][1000 genomes]
rs73452711	1.00[AMR][1000 genomes]
rs73452717	1.00[AMR][1000 genomes]
rs73452734	1.00[AMR][1000 genomes]
rs73458462	1.00[AMR][1000 genomes]
rs73458721	1.00[AMR][1000 genomes]
rs73458732	1.00[AMR][1000 genomes]
rs73460504	1.00[AMR][1000 genomes]
rs73460506	1.00[AMR][1000 genomes]
rs73460510	1.00[AMR][1000 genomes]
rs73460516	1.00[AMR][1000 genomes]
rs73460525	1.00[AMR][1000 genomes]
rs73647292	1.00[AMR][1000 genomes]
rs73647298	1.00[AMR][1000 genomes]
rs73650513	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72657800-72660400	Flanking Active TSS	HMEC	breast
2	chr9:72658000-72660000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr9:72658000-72660200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:72658000-72661000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
5	chr9:72658200-72659800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr9:72658200-72659800	Active TSS	H9 Cell Line	embryonic stem cell
7	chr9:72658200-72659800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr9:72658200-72659800	Active TSS	Ovary	ovary
9	chr9:72658200-72660000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
10	chr9:72658200-72660000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
11	chr9:72658200-72660200	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr9:72658200-72660400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:72658200-72660400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:72658200-72660600	Active TSS	Right Atrium	heart
15	chr9:72658200-72661400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
16	chr9:72658200-72662600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:72658400-72659800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:72658400-72659800	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr9:72658400-72659800	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr9:72658400-72659800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr9:72658400-72659800	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr9:72658400-72660000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:72658400-72660000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
24	chr9:72658400-72660000	Active TSS	HSMMtube	muscle
25	chr9:72658400-72660200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
26	chr9:72658400-72660200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
27	chr9:72658400-72660400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:72658400-72660400	Active TSS	Rectal Smooth Muscle	rectum
29	chr9:72658400-72660600	Active TSS	Colon Smooth Muscle	Colon
30	chr9:72658600-72659800	Active TSS	H1 Cell Line	embryonic stem cell
31	chr9:72658600-72659800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:72658600-72659800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
33	chr9:72658600-72659800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:72658600-72659800	Active TSS	Aorta	Aorta
35	chr9:72658600-72659800	Bivalent Enhancer	Liver	Liver
36	chr9:72658600-72659800	Active TSS	Lung	lung
37	chr9:72658600-72659800	Active TSS	Placenta Amnion	Placenta Amnion
38	chr9:72658600-72659800	Active TSS	NHDF-Ad	bronchial
39	chr9:72658600-72660000	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr9:72658600-72660000	Active TSS	Brain Angular Gyrus	brain
41	chr9:72658600-72660200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr9:72658600-72660200	Active TSS	Psoas Muscle	Psoas
43	chr9:72658600-72662200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:72658800-72659800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
45	chr9:72658800-72659800	Active TSS	Brain Anterior Caudate	brain
46	chr9:72658800-72659800	Active TSS	Brain Substantia Nigra	brain
47	chr9:72658800-72659800	Enhancers	Fetal Heart	heart
48	chr9:72658800-72659800	Active TSS	Fetal Lung	lung
49	chr9:72658800-72659800	Active TSS	Left Ventricle	heart
50	chr9:72658800-72659800	Active TSS	Osteobl	bone

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