Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11141382	1.00[EUR][1000 genomes]
rs1493044	1.00[EUR][1000 genomes]
rs1493045	1.00[EUR][1000 genomes]
rs1493049	1.00[EUR][1000 genomes]
rs1536991	1.00[AMR][1000 genomes]
rs1963588	1.00[EUR][1000 genomes]
rs57477899	1.00[EUR][1000 genomes]
rs58305401	1.00[AMR][1000 genomes]
rs60109285	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60355539	1.00[EUR][1000 genomes]
rs6559824	1.00[EUR][1000 genomes]
rs7025350	1.00[AMR][1000 genomes]
rs73458462	1.00[AMR][1000 genomes]
rs73458478	1.00[AMR][1000 genomes]
rs73460504	1.00[AMR][1000 genomes]
rs73460506	1.00[AMR][1000 genomes]
rs73647281	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647293	1.00[EUR][1000 genomes]
rs73647294	1.00[EUR][1000 genomes]
rs73647295	1.00[EUR][1000 genomes]
rs73647296	1.00[EUR][1000 genomes]
rs73647297	1.00[EUR][1000 genomes]
rs73647298	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647299	1.00[EUR][1000 genomes]
rs73647300	1.00[EUR][1000 genomes]
rs7859067	1.00[EUR][1000 genomes]
rs7859167	1.00[EUR][1000 genomes]
rs7863994	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:72471000-72481800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:72472800-72476200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:72474000-72476800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:72475000-72487000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:72475400-72479000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:72475400-72487600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:72475400-72495200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:72475600-72476600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:72475600-72476600	Enhancers	HMEC	breast
11	chr9:72475600-72476800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:72475600-72476800	Enhancers	NHEK	skin
13	chr9:72475800-72476200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:72475800-72476400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:72476000-72476400	Enhancers	HSMMtube	muscle
16	chr9:72476000-72476400	Enhancers	NH-A	brain
17	chr9:72476000-72476400	Enhancers	Osteobl	bone

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