Variant report

Variant	rs11141382
Chromosome Location	chr9:72654573-72654574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72649187..72651016-chr9:72654412..72657228,2	K562	blood:
2	chr9:72649187..72651651-chr9:72654412..72657228,3	K562	blood:
3	chr9:72650886..72653009-chr9:72653069..72655464,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12338382	1.00[EUR][1000 genomes]
rs1493044	1.00[EUR][1000 genomes]
rs1493045	1.00[EUR][1000 genomes]
rs1493049	1.00[EUR][1000 genomes]
rs1963588	1.00[EUR][1000 genomes]
rs57477899	1.00[EUR][1000 genomes]
rs60109285	1.00[EUR][1000 genomes]
rs60355539	1.00[EUR][1000 genomes]
rs6559824	1.00[EUR][1000 genomes]
rs7024201	1.00[EUR][1000 genomes]
rs73647292	1.00[EUR][1000 genomes]
rs73647293	1.00[EUR][1000 genomes]
rs73647294	1.00[EUR][1000 genomes]
rs73647295	1.00[EUR][1000 genomes]
rs73647296	1.00[EUR][1000 genomes]
rs73647297	1.00[EUR][1000 genomes]
rs73647298	1.00[EUR][1000 genomes]
rs73647299	1.00[EUR][1000 genomes]
rs73647300	1.00[EUR][1000 genomes]
rs7859067	1.00[EUR][1000 genomes]
rs7859167	1.00[EUR][1000 genomes]
rs7863994	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3438997	chr9:72653223-72657079	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72647400-72657200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:72653400-72654600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:72653400-72658400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:72653600-72654600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:72653600-72654600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:72653600-72654800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr9:72653600-72654800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:72653600-72654800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:72653600-72654800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:72653600-72655000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:72653600-72655000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:72653600-72655000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:72653600-72655000	Weak transcription	HepG2	liver
14	chr9:72653600-72655200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:72653600-72655200	Weak transcription	Adipose Nuclei	Adipose
16	chr9:72653600-72655200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr9:72653600-72655200	Weak transcription	Ovary	ovary
18	chr9:72653600-72655200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr9:72653600-72655200	Weak transcription	Stomach Mucosa	stomach
20	chr9:72653600-72655200	Weak transcription	Spleen	Spleen
21	chr9:72653600-72655200	Weak transcription	Hela-S3	cervix
22	chr9:72653600-72655200	Weak transcription	HSMMtube	muscle
23	chr9:72653600-72655200	Weak transcription	HUVEC	blood vessel
24	chr9:72653600-72655400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr9:72653600-72655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr9:72653600-72655400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:72653600-72655400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr9:72653600-72655400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr9:72653600-72655600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:72653600-72655600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr9:72653600-72655600	Weak transcription	Fetal Stomach	stomach
32	chr9:72653600-72656400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr9:72653600-72656600	Weak transcription	Esophagus	oesophagus
34	chr9:72653600-72656600	Weak transcription	Fetal Brain Male	brain
35	chr9:72653600-72657000	Weak transcription	HMEC	breast
36	chr9:72653600-72657200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:72653600-72657200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:72653600-72657200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr9:72653600-72657200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr9:72653600-72657200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr9:72653600-72657200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:72653600-72657200	Weak transcription	NHEK	skin
43	chr9:72653600-72657400	Weak transcription	Brain Hippocampus Middle	brain
44	chr9:72653600-72657600	Weak transcription	HSMM	muscle
45	chr9:72653600-72657800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr9:72653600-72657800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:72653600-72657800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr9:72653600-72657800	Weak transcription	Fetal Heart	heart
49	chr9:72653600-72657800	Weak transcription	Placenta	Placenta
50	chr9:72653600-72657800	Weak transcription	Right Atrium	heart

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