Variant report

Variant	rs7859067
Chromosome Location	chr9:72508746-72508747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11141382	1.00[EUR][1000 genomes]
rs1493044	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1493045	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1493049	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1963588	1.00[EUR][1000 genomes]
rs57477899	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60109285	1.00[EUR][1000 genomes]
rs60355539	1.00[EUR][1000 genomes]
rs6559824	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73647281	1.00[EUR][1000 genomes]
rs73647292	1.00[EUR][1000 genomes]
rs73647293	1.00[EUR][1000 genomes]
rs73647294	1.00[EUR][1000 genomes]
rs73647295	1.00[EUR][1000 genomes]
rs73647296	1.00[EUR][1000 genomes]
rs73647297	1.00[EUR][1000 genomes]
rs73647298	1.00[EUR][1000 genomes]
rs73647299	1.00[EUR][1000 genomes]
rs73647300	1.00[EUR][1000 genomes]
rs7859167	1.00[EUR][1000 genomes]
rs7863994	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv831612	chr9:72473778-72634253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv466416	chr9:72479046-72513240	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv614581	chr9:72479046-72513240	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv893439	chr9:72500956-72568962	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72500800-72509400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:72500800-72512800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:72501000-72509400	Weak transcription	Osteobl	bone
4	chr9:72501200-72509600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr9:72501200-72512600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:72501600-72509400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:72501800-72513000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:72502800-72512600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:72502800-72512600	Weak transcription	HMEC	breast
10	chr9:72504600-72509600	Weak transcription	A549	lung
11	chr9:72507400-72508800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:72507800-72509000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:72508200-72509000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:72508200-72509400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:72508200-72509600	Weak transcription	Right Ventricle	heart
16	chr9:72508200-72512600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:72508200-72512600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr9:72508400-72509400	Weak transcription	Fetal Heart	heart
19	chr9:72508600-72508800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr9:72508600-72512800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links