Variant report

Variant	rs73448908
Chromosome Location	chr9:72906112-72906113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72905525..72907442-chr9:72911391..72913609,2	MCF-7	breast:
2	chr9:72904493..72907412-chr9:72913859..72916976,3	K562	blood:
3	chr9:72905306..72907170-chr9:72915161..72918867,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11142463	1.00[AMR][1000 genomes]
rs12341550	1.00[AMR][1000 genomes]
rs73446761	1.00[AMR][1000 genomes]
rs73446770	1.00[AMR][1000 genomes]
rs73446796	1.00[AMR][1000 genomes]
rs73448656	1.00[AMR][1000 genomes]
rs73448659	1.00[AMR][1000 genomes]
rs73448667	1.00[AMR][1000 genomes]
rs73448674	1.00[AMR][1000 genomes]
rs73448682	1.00[AMR][1000 genomes]
rs73451417	1.00[AMR][1000 genomes]
rs73451448	1.00[AMR][1000 genomes]
rs73451458	1.00[AMR][1000 genomes]
rs73452704	1.00[AMR][1000 genomes]
rs73452711	1.00[AMR][1000 genomes]
rs73452717	1.00[AMR][1000 genomes]
rs73452734	1.00[AMR][1000 genomes]
rs73454775	1.00[AMR][1000 genomes]
rs73456672	1.00[AMR][1000 genomes]
rs73458721	1.00[AMR][1000 genomes]
rs73458732	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72875400-72906200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:72876000-72906200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:72876400-72916800	Weak transcription	Colonic Mucosa	Colon
5	chr9:72876400-72939400	Weak transcription	Spleen	Spleen
6	chr9:72876400-72942600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
8	chr9:72877000-72939800	Weak transcription	Gastric	stomach
9	chr9:72877000-72942800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:72877600-72909600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:72877600-72935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:72878600-72937600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:72880000-72939400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:72880200-72906200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:72885400-72916800	Weak transcription	Esophagus	oesophagus
16	chr9:72887600-72906200	Weak transcription	Psoas Muscle	Psoas
17	chr9:72887600-72916800	Weak transcription	Aorta	Aorta
18	chr9:72891000-72908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:72891000-72911000	Strong transcription	HSMM	muscle
20	chr9:72891000-72923400	Strong transcription	Dnd41	blood
21	chr9:72891200-72907400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr9:72892800-72907600	Strong transcription	NH-A	brain
24	chr9:72893000-72906600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:72893400-72907400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr9:72893400-72908000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:72894600-72917000	Weak transcription	Pancreas	Pancrea
28	chr9:72895400-72906600	Weak transcription	Fetal Brain Female	brain
29	chr9:72896200-72906200	Weak transcription	Brain Anterior Caudate	brain
30	chr9:72896200-72916800	Weak transcription	Right Ventricle	heart
31	chr9:72897800-72912800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr9:72898200-72906200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr9:72898200-72922200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr9:72898600-72906200	Weak transcription	Fetal Intestine Small	intestine
35	chr9:72898600-72912800	Weak transcription	Fetal Brain Male	brain
36	chr9:72899000-72906200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr9:72899000-72906800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:72899000-72914600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr9:72899200-72914200	Weak transcription	NHEK	skin
40	chr9:72899600-72913000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr9:72900000-72907600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr9:72900200-72906800	Strong transcription	Fetal Intestine Large	intestine
43	chr9:72900600-72906200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:72900600-72906400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:72900600-72916800	Weak transcription	Lung	lung
46	chr9:72900600-72916800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr9:72900600-72924000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr9:72900600-72939400	Weak transcription	Small Intestine	intestine
49	chr9:72900600-72942600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr9:72900800-72906800	Weak transcription	HMEC	breast

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