Variant report

Variant	rs1114707
Chromosome Location	chr6:134509254-134509255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12196153	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1628660	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1743961	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1743963	0.80[ASN][1000 genomes]
rs1763528	0.80[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7744920	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	esv2429385	chr6:134509253-134509275	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1114707	TAAR1	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134499800-134523200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:134500000-134512000	Weak transcription	Right Ventricle	heart
3	chr6:134502000-134509600	Enhancers	HepG2	liver
4	chr6:134503800-134509400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:134504400-134512000	Weak transcription	K562	blood
6	chr6:134505200-134516400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:134505400-134511200	Weak transcription	Fetal Intestine Large	intestine
8	chr6:134506600-134522800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:134508000-134511200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:134508000-134518000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:134508200-134509600	Enhancers	Brain Substantia Nigra	brain
12	chr6:134508200-134512200	Weak transcription	Primary T cells from cord blood	blood
13	chr6:134508400-134509600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:134508800-134515000	Weak transcription	Brain Anterior Caudate	brain
15	chr6:134509000-134509400	Enhancers	Brain Angular Gyrus	brain
16	chr6:134509000-134514400	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:134509000-134537800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:134509200-134512000	Weak transcription	Fetal Heart	heart
19	chr6:134509200-134513800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:134509200-134516400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:134509200-134516400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:134509200-134520000	Weak transcription	Pancreas	Pancrea

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