Variant report

Variant	rs11148276
Chromosome Location	chr13:54101324-54101325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56160835	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59763146	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73496488	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73496490	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73496491	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73496494	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73496499	0.87[AMR][1000 genomes]
rs73498405	0.81[AFR][1000 genomes]
rs73498408	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73498409	1.00[AMR][1000 genomes]
rs74089033	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051015	chr13:54100401-54125854	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54097400-54102400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:54100600-54101600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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