Variant report

Variant	rs1115200
Chromosome Location	chr8:107666508-107666509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10086709	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs10087077	0.81[EUR][1000 genomes]
rs10089890	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs10090534	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs10091390	0.94[CEU][hapmap]
rs10091611	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10092665	0.81[EUR][1000 genomes]
rs10099361	0.81[ASN][1000 genomes]
rs10104941	0.88[CEU][hapmap]
rs10106834	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs10108240	0.87[CEU][hapmap]
rs10110610	0.94[CEU][hapmap]
rs10283128	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs10283130	0.87[CEU][hapmap]
rs10505095	0.94[CEU][hapmap]
rs12543558	0.87[CEU][hapmap]
rs12544138	0.81[EUR][1000 genomes]
rs13254031	0.81[EUR][1000 genomes]
rs13255878	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13259080	0.87[CEU][hapmap]
rs16875002	0.81[EUR][1000 genomes]
rs16875065	0.85[CEU][hapmap];0.93[JPT][hapmap]
rs16875066	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs1872282	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs28921395	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36011510	0.81[EUR][1000 genomes]
rs3779996	0.88[CEU][hapmap];0.88[JPT][hapmap]
rs7461484	0.88[CEU][hapmap]
rs9297385	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107658200-107668800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:107658600-107668600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:107661400-107669400	Weak transcription	Esophagus	oesophagus
5	chr8:107661600-107668600	Weak transcription	Stomach Mucosa	stomach
6	chr8:107662800-107668800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:107666400-107668600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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