Variant report

Variant	rs11154693
Chromosome Location	chr6:133054958-133054959
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
VNN3	TF binding region
ENSG00000200534	Chromatin interaction
ENSG00000271488	Chromatin interaction
ENSG00000221500	Chromatin interaction
ENSG00000112303	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11962560	0.87[ASN][1000 genomes]
rs11965457	0.87[ASN][1000 genomes]
rs12194625	1.00[CHB][hapmap]
rs12525900	0.87[ASN][1000 genomes]
rs13203382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13204496	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13208524	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13211436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1883616	0.87[ASN][1000 genomes]
rs767148	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9321365	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321367	1.00[CHB][hapmap]
rs9389033	1.00[CHB][hapmap]
rs9483497	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133044400-133066200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:133050200-133055600	Weak transcription	NHDF-Ad	bronchial
3	chr6:133052000-133055000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:133052000-133055400	Active TSS	Primary B cells from cord blood	blood
5	chr6:133052200-133056000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:133052400-133058800	Enhancers	Stomach Mucosa	stomach
7	chr6:133052600-133055000	Weak transcription	Primary T cells from cord blood	blood
8	chr6:133052600-133055600	Weak transcription	Hela-S3	cervix
9	chr6:133052600-133056600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:133053000-133055800	Active TSS	Liver	Liver
11	chr6:133053400-133056000	Active TSS	Primary hematopoietic stem cells	blood
12	chr6:133053400-133056800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr6:133053800-133055200	Weak transcription	Placenta	Placenta
14	chr6:133053800-133056000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
15	chr6:133053800-133056200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:133054400-133058400	Enhancers	HepG2	liver
17	chr6:133054600-133055200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links