Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:133049774..133051386-chr6:133135438..133137787,2	MCF-7	breast:
2	chr6:133049578..133050417-chr6:133089067..133089780,4	MCF-7	breast:
3	chr6:133049609..133052376-chr6:133137041..133138744,2	MCF-7	breast:
4	chr6:133049010..133050682-chr6:133062488..133064307,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11154693	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11961092	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11962560	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194625	1.00[CHB][hapmap]
rs12525900	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204496	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13208524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1883616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33938039	0.86[ASN][1000 genomes]
rs33944856	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33961073	0.86[ASN][1000 genomes]
rs33966619	0.86[ASN][1000 genomes]
rs33986412	0.86[ASN][1000 genomes]
rs3778176	0.86[ASN][1000 genomes]
rs62425078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs767148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9321367	1.00[CHB][hapmap]
rs9389033	1.00[CHB][hapmap]
rs9483497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133038000-133053400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:133043200-133050000	Strong transcription	Liver	Liver
4	chr6:133043200-133051200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:133043600-133051600	Weak transcription	HepG2	liver
6	chr6:133044400-133052000	Weak transcription	Primary B cells from cord blood	blood
7	chr6:133044400-133066200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:133046000-133051600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:133046400-133051800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:133048400-133052400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:133048800-133050000	Enhancers	Stomach Mucosa	stomach
12	chr6:133049400-133051600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:133049800-133050400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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