Variant report

Variant	rs11962560
Chromosome Location	chr6:133042412-133042413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11154693	0.87[ASN][1000 genomes]
rs11961092	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11965457	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525900	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203382	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204496	0.86[ASN][1000 genomes]
rs13208524	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13211436	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883616	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33938039	0.86[ASN][1000 genomes]
rs33944856	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs33961073	0.86[ASN][1000 genomes]
rs33966619	0.86[ASN][1000 genomes]
rs33986412	0.86[ASN][1000 genomes]
rs3778176	0.86[ASN][1000 genomes]
rs62425078	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs767148	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321365	0.87[ASN][1000 genomes]
rs9483497	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133035400-133044200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:133037600-133043200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:133037600-133043200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:133038000-133053400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:133040200-133043600	Enhancers	HepG2	liver
7	chr6:133041200-133043200	Weak transcription	Liver	Liver
8	chr6:133041400-133042800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:133041800-133042600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:133041800-133044000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:133041800-133048400	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:133042000-133043000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:133042200-133042600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links