Variant report

Variant	rs33938039
Chromosome Location	chr6:133071071-133071072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133070450..133072102-chr6:133074566..133077199,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11962560	0.86[ASN][1000 genomes]
rs11965457	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11967890	1.00[AFR][1000 genomes]
rs12525900	0.86[ASN][1000 genomes]
rs13203382	0.86[ASN][1000 genomes]
rs13204496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208524	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13211436	0.86[ASN][1000 genomes]
rs1883616	0.86[ASN][1000 genomes]
rs33944856	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33961073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33966619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33986412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767148	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv517934	chr6:133062916-133072650	Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133061400-133098000	Weak transcription	Spleen	Spleen
2	chr6:133061600-133072200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:133063600-133072200	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:133064200-133072000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:133064200-133083000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:133064800-133078000	Strong transcription	Primary T cells from cord blood	blood
7	chr6:133065000-133098000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:133065400-133073800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr6:133067800-133071600	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
10	chr6:133068800-133083200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:133069600-133083200	Weak transcription	Thymus	Thymus
12	chr6:133069800-133075200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:133070000-133071200	Genic enhancers	GM12878-XiMat	blood
14	chr6:133070000-133072000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:133070000-133072000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:133070000-133072200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr6:133070200-133071200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:133070200-133073800	Genic enhancers	Primary B cells from peripheral blood	blood
19	chr6:133070400-133071200	Enhancers	Liver	Liver
20	chr6:133070400-133071400	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
21	chr6:133070400-133072400	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:133070600-133072000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr6:133070800-133072000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:133070800-133072200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:133070800-133072200	Weak transcription	Stomach Mucosa	stomach
26	chr6:133070800-133072400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:133070800-133073000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:133070800-133077600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:133070800-133078800	Weak transcription	Placenta	Placenta
30	chr6:133070800-133079000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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